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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacattgcatctgattttcctttattcattgccattccttgatcacacatgctaacatttgatttttttttctcttgcagGAAAAATGGGCAAAGAACCTCTATATTGCATCTATTTGTTATGGGAGAACAGTGTCTTAAACTGATCAAATTGAGATTTCTGGCTGACATCATTTTGACC

Basic information

species Glycine max
transcript GLYMA04G09070.2
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G09070.2 (Glycine max), 3'ss of exon 15
lower sequence: AT2G25760.2 (Arabidopsis thaliana), 3'ss of exon 15
--------gtaaacattgcatctgattttcctttattcattgccattccttgatcacacatgctaacatttgatttttttttctcttgcagGAAAAATGGGCAAAGAACCTCTATATTGCATCTATTTGTTATGGGAGAACAGTGTCTTAAACTGATCAAATTGAGATTTCTGGCTGACATCATTTTGACC-
        |      |   ||    || ||| |||||  ||| | ||||    ||        ||| || |   |||| ||| |  |||||||||||||||  ||||| || || |||||||| |||||||||||  |||| ||||| | || |    |||||     ||  |    |  ||| |||  |  
gtttgcttgctggtctcttattcctttatccattattatttggctttccaacttcttggggtgtaatatatctattttattttttctgcagGAAAAATGGGGCAAGAATCTTTACATTGCATCGATTTGTTATGGTCGAACTGTGTCATGAAGTT-CTAAATTTTTTGTTAGGATGCATCTCAATTTAGCTT

upper sequence: GLYMA04G09070.2 (Glycine max), 3'ss of exon 15
lower sequence: Vv09s0002g03680.t01 (Vitis vinifera), 3'ss of exon 15
--------------------------------------------gtaaacattgca---tctgattttcctttattcattgccattccttgatcacacatgctaacatttgatttttttttctcttgcagGAAAAATGGGCAAAGAACCTCTATATTGCATCTATTTGTTATGGGAGAACAGTGTCTTAAACTGATCAAA------TTGAGATTTCTGGCTGACATCATTTTGACC
                                               || |||| |    ||   |||  | |  | | ||  |||| |   ||    || || | |||   ||   |  |   |||||||| ||||||||||| || ||||||||||| ||  ||||||||||  | ||||| || | |  ||   ||       ||||| | |    |||||| ||||      
gtggtttttttttttttaatatattgttcccagattctgataaaaagaatattgtagttcctagattttgtctggttactga-attcttctttcttcaattctgaaatt-atttggatgattctttgcagGAGAAATGGGCAAAAAATCTCTATATTGCGTCCGTTTGTTATGGCCGTACAGTTTCATGAGTTGCCTAACATTTTCTTGAGGTGTTCC-CTGACACCATTG-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193650076|gb|FK598053.1|FK598053
EST:     AAACTCAGGAGACACTCCGCACATCTGCTTTTCCTGGTACTCATGTCAAG                         GAAAAATGGGCAAAGAACCTCTATATTGCATCTATTTGTTACGGGAGAACA
genomic: AAACTCAGGAGACACTCCGCACATCTGCTTTTCCTGGTACTCATGTCAAGgtaaacattg ... tctcttgcagGAAAAATGGGCAAAGAACCTCTATATTGCATCTATTTGTTATGGGAGAACA
EST: gi|208122360|gb|GD920825.1|GD920825
EST:     AAACTCAGGAGACACTCCGCACATCTGCTTTTCCTGGTACTCATGTCAAG                         GAAAAATGGGCAAAGAACCTCTATATTGCATCTATTTGTTACGGGAGAACA
genomic: AAACTCAGGAGACACTCCGCACATCTGCTTTTCCTGGTACTCATGTCAAGgtaaacattg ... tctcttgcagGAAAAATGGGCAAAGAACCTCTATATTGCATCTATTTGTTATGGGAGAACA
EST: gi|193497751|gb|FK462439.1|FK462439
EST:     AAACTCAGGAGACACTCCGCACATCTGCTTTTCCTGGTACTCATGTCAAG                         GAAAAATGGGCAAAGAACCTCTATATTGCATCTATTTGTTACGGGAGAACA
genomic: AAACTCAGGAGACACTCCGCACATCTGCTTTTCCTGGTACTCATGTCAAGgtaaacattg ... tctcttgcagGAAAAATGGGCAAAGAACCTCTATATTGCATCTATTTGTTATGGGAGAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcattgccattccttgatcacacatgctaacatttgatttttttttctcttgcagGAAAAATGGGCAAAGAACCTCTATATTGCATCTATTTGTTATGGGAGAACAGTGTCTTAAACTGATCAAATTGAGATTTCTGGCTGACATCATTTTGACC
                              catttgattttttttt  CT-rich tract
                           taacatttgatttttt  TA-rich tract