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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgaatattatagatgcttcaaatttttcataaaataatccaactccaaggtctttgtaattatttttctctattacagGTTATTGTGACTGTGGATGCTTCAGATGCAGATGAATTCTCAGAGGTGTTCTCCAAGCCTCTCAGGTCTCTTCCTTATGATTCACCTGGACAGACTTTTG

Basic information

species Glycine max
transcript GLYMA04G01470.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G01470.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv03s0063g02450.t01 (Vitis vinifera), 3'ss of exon 15
gtaatgaatattatagatgcttcaaatttttcataaaataatccaactccaaggtctttgtaattatttttctctatt-----acagGTTATTGTGACTGTGGATGCTTCAGATGCAGATGAATTCTCAGAGGTGTTCTCCAAGCCTCTCAGGTCTCTTCCTTATGATTCACCTGGACAGACTTTTG
|||||||  | | ||||        | ||    |    | | |  ||||   |   |   |  | | |||||| || |      ||||| | ||| |  |||||||||||||||||||| |||||||| || || |   ||||||| || || |||||||||||||||||||| ||||| || ||||
gtaatgaccaatttagaacagctgcacttcatgttttctgaccttactc-gggacttccattgtaacttttctatacttgttggcagGTCACTGTTATCGTGGATGCTTCAGATGCAGAGGAATTCTCCGAAGTATCAACCAAGCCCCTAAGATCTCTTCCTTATGATTCACCAGGACAAACATTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208313873|gb|GE113055.1|GE113055
EST:     TGTTCCAGTACAACTGCACAAACACGATACCAGAGCAATTGTTGGAAGAT                         GTTATTGTGACTGTGGATGCTTCAGATGCAGATGAATTCTCAGAGGTGTTC
genomic: TGTTCCAGTACAACTGCACAAACACGATACCAGAGCAATTGTTGGAAGATgtaatgaata ... tctattacagGTTATTGTGACTGTGGATGCTTCAGATGCAGATGAATTCTCAGAGGTGTTC
EST: gi|207783747|gb|GD758883.1|GD758883
EST:     TGTTCCAGTACAACTGCACAAACACGATACCAGAGCAATTGTTGGAAGAT                         GTTATTGTGACTGTGGATGCTTCAGATGCAGATGAATTCTCAGAGGTGTTC
genomic: TGTTCCAGTACAACTGCACAAACACGATACCAGAGCAATTGTTGGAAGATgtaatgaata ... tctattacagGTTATTGTGACTGTGGATGCTTCAGATGCAGATGAATTCTCAGAGGTGTTC
EST: gi|10236799|gb|BE805687.1|BE805687
EST:     TGTTCCAGTACAACTGCACAAACACGATACCAGAGCAATTGTTGGAAGAT                         GTTATTGTGACTGTGGATGCTTCAGATGCAGATGAATTCTCAGAGGTGTTC
genomic: TGTTCCAGTACAACTGCACAAACACGATACCAGAGCAATTGTTGGAAGATgtaatgaata ... tctattacagGTTATTGTGACTGTGGATGCTTCAGATGCAGATGAATTCTCAGAGGTGTTC
EST: gi|151393638|gb|EV263513.1|EV263513
EST:     TGTTCCAGTACAACTGCACAAACACGATACCAGAGCAATTGTTGGAAGAT                         GTTATTGTGACTGTGGATGCTTCAGATGCAGATGAATTCTCAGAGGTGTTC
genomic: TGTTCCAGTACAACTGCACAAACACGATACCAGAGCAATTGTTGGAAGATgtaatgaata ... tctattacagGTTATTGTGACTGTGGATGCTTCAGATGCAGATGAATTCTCAGAGGTGTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcataaaataatccaactccaaggtctttgtaattatttttctctattacagGTTATTGTGACTGTGGATGCTTCAGATGCAGATGAATTCTCAGAGGTGTTCTCCAAGCCTCTCAGGTCTCTTCCTTATGATTCACCTGGACAGACTTTTG
                                    ttatttttctctatt  CT-rich tract
                             tttgtaattatttttc  TA-rich tract