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gtattcagaaatgaatttttgataacgtgatatttaggcttattcatctatattttttttcatattaatttcatggttatatatgcatgtcaatatttgttattaccgttgtattcatgccttattttttggccttggtgcagCTTTCGTCAACTGCAGTTAATAATTCATCTAATGGGAATGGACCTTCAGAATCAGCAGATGATGACTTGCCTAGTGTGATGACATGTGCTAATTACCTGA
species | Glycine max |
transcript | GLYMA04G00530.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: CACCTGGAGGGCTGGCAGTTCTAAATCCAAAACTAACGATTGTGAGGAAG CTTTCGTCAACTGCAGTTAATAATTCATCTAATGGGAATGGACCTTCAGAAEST: gi|18734677|gb|BM528321.1|BM528321
genomic: CACCTGGAGGGCTGGCAGTTCTAAATCCAAAACTAACGATTGTGAGGAAGgtattcagaa ... cttggtgcagCTTTCGTCAACTGCAGTTAATAATTCATCTAATGGGAATGGACCTTCAGAA
EST: CACCTGGAGGGCTGGCAGTTCTAAATCCAAAACTAACGATTGTGAGGAAG CTTTCGTCAACTGCAGTTAATAATTCATCTAATGGGAATGGACCTTCAGAAEST: gi|22933315|gb|BU550454.1|BU550454
genomic: CACCTGGAGGGCTGGCAGTTCTAAATCCAAAACTAACGATTGTGAGGAAGgtattcagaa ... cttggtgcagCTTTCGTCAACTGCAGTTAATAATTCATCTAATGGGAATGGACCTTCAGAA
EST: CACCTGGAGGGCTGGCAGTTCTAAATCCAAAACTAACGATTGTGAGGAAG CTTTCGTCAACTGCAGTTAATAATTCATCTAATGGGAATGGACCTTCAGAAEST: gi|120529051|gb|EH257185.1|EH257185
genomic: CACCTGGAGGGCTGGCAGTTCTAAATCCAAAACTAACGATTGTGAGGAAGgtattcagaa ... cttggtgcagCTTTCGTCAACTGCAGTTAATAATTCATCTAATGGGAATGGACCTTCAGAA
EST: CACCTGGAGGGCTGGCAGTTCTAAATCCAAAACTAACGATTGTGAGGAAG CTTTCGTCAACTGCAGTTAATAATTCATCTAATGGGAATGGACCTTCAGAAEST: gi|254323026|gb|GR839939.1|GR839939
genomic: CACCTGGAGGGCTGGCAGTTCTAAATCCAAAACTAACGATTGTGAGGAAGgtattcagaa ... cttggtgcagCTTTCGTCAACTGCAGTTAATAATTCATCTAATGGGAATGGACCTTCAGAA
EST: CACCTGGAGGGCTGGCAGTTCTAAATCCAAAACTAACGATTGTGAGGAAG CTTTCGTCAACTGCAGTTAATAATTCATCTAATGGGAATGGACCTTCAGAA
genomic: CACCTGGAGGGCTGGCAGTTCTAAATCCAAAACTAACGATTGTGAGGAAGgtattcagaa ... cttggtgcagCTTTCGTCAACTGCAGTTAATAATTCATCTAATGGGAATGGACCTTCAGAA
gtcaatatttgttattaccgttgtattcatgccttattttttggccttggtgcagCTTTCGTCAACTGCAGTTAATAATTCATCTAATGGGAATGGACCTTCAGAATCAGCAGATGATGACTTGCCTAGTGTGATGACATGTGCTAATTACCTGA
tatttgttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattcagaaatgaatttttgataacgtgatatttaggcttattcatctatattttttttcatattaatttcatggttatatatgcatgtcaatatttgttattaccgttgtattcatgccttattttttggccttggtgcagCTTTCGTCAACTGCAGTTAATAATTCATCTAATGGGAATGGACCTTCAGAATCAGCAGATGATGACTTGCCTAGTGTGATGACATGTGCTAATTACCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG