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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacacctgctttatgaaacaatacagtcttaaatatgttttgtactattagaataatgttattttactttggatttttggaagGTTGATTGGAAATTAATGGATCTGAGCTATTTACTGGAG

Basic information

species Glycine max
transcript GLYMA04G00200.1
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10254009|gb|BE821775.1|BE821775
EST:     AGTTTTTTAAGCAATATCTTGANNCAATCAAGCTGAATGATGTCAAG                         GTTGATTNGAAATNAATGGATCTGAGCTATTTACTGGAG
genomic: AGTTTTTTAAGCAATATCTTGAGCCAATCAAGCTGAATGATGTCAAGgtacacctgc ... tttttggaagGTTGATTGGAAATTAATGGATCTGAGCTATTTACTGGAG
EST: gi|208279807|gb|GE078451.1|GE078451
EST:     GACAGTTTTTTAAGCAATATCTTGAGCCAATCAAGCTGAATGATGTCAAG                         GTTGATTGGAAATTAATGGATCTGAGCTATTTACTGGAG
genomic: GACAGTTTTTTAAGCAATATCTTGAGCCAATCAAGCTGAATGATGTCAAGgtacacctgc ... tttttggaagGTTGATTGGAAATTAATGGATCTGAGCTATTTACTGGAG
EST: gi|17400899|gb|BM177681.1|BM177681
EST:     GACAGTTTTTTAAGCAATATCTTGAGCCAATCAAGCTGAATGATGTCAAG                         GTTGATTGGAAATTAATGGATCTGAGCTATTTACTGGAG
genomic: GACAGTTTTTTAAGCAATATCTTGAGCCAATCAAGCTGAATGATGTCAAGgtacacctgc ... tttttggaagGTTGATTGGAAATTAATGGATCTGAGCTATTTACTGGAG
EST: gi|193578353|gb|FK537573.1|FK537573
EST:     GACAGTTTTTTAAGCAATATCTTGAGCCAATCAAGCTGAATGATGTCAAG                         GTTGATTGGAAATTAATGGATCTGAGCTATTTACTGGAG
genomic: GACAGTTTTTTAAGCAATATCTTGAGCCAATCAAGCTGAATGATGTCAAGgtacacctgc ... tttttggaagGTTGATTGGAAATTAATGGATCTGAGCTATTTACTGGAG
EST: gi|208266208|gb|GE064543.1|GE064543
EST:     GACAGTTTTTTAAGCAATATCTTGAGCCAATCAAGCTGAATGATGTCAAG                         GTTGATTGGAAATTAATGGATCTGAGCTATTTACTGGAG
genomic: GACAGTTTTTTAAGCAATATCTTGAGCCAATCAAGCTGAATGATGTCAAGgtacacctgc ... tttttggaagGTTGATTGGAAATTAATGGATCTGAGCTATTTACTGGAG
EST: gi|207826963|gb|GD801138.1|GD801138
EST:     GACAGTTTTTTAAGCAATATCTTGAGCCAATCAAGCTGAATGATGTCAAG                         GTTGATTGGAA-TTAATGGATCTGAGCTATTTACTGGAG
genomic: GACAGTTTTTTAAGCAATATCTTGAGCCAATCAAGCTGAATGATGTCAAGgtacacctgc ... tttttggaagGTTGATTGGAAATTAATGGATCTGAGCTATTTACTGGAG
EST: gi|308098353|gb|HO760094.1|HO760094
EST:     AATCAAGCTGAATGATGTCAAG                         GTTGATTGGAAATTAATGGATCTGAGCTATTTACTGGAG
genomic: AATCAAGCTGAATGATGTCAAGgtacacctgc ... tttttggaagGTTGATTGGAAATTAATGGATCTGAGCTATTTACTGGAG
EST: gi|14011124|gb|BG726055.1|BG726055
EST:     GACAGTTTTTTAAGCAATATCTTGAGCCAATCAAGCTGAATGATGTCAAG                         GTTGATTGGAAATTAATGGATCTGAGCTATTTACTGGAG
genomic: GACAGTTTTTTAAGCAATATCTTGAGCCAATCAAGCTGAATGATGTCAAGgtacacctgc ... tttttggaagGTTGATTGGAAATTAATGGATCTGAGCTATTTACTGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaatatgttttgtactattagaataatgttattttactttggatttttggaagGTTGATTGGAAATTAATGGATCTGAGCTATTTACTGGAG
                                             ttttt  CT-rich tract
         ttttgtactattagaa  TA-rich tract