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...taaccttttctttgctttgtaatgagttgtcatgcataagcttcagttagtaaagcaagtgctgtgtattcatgatcttgcggatatgttactttcccagGATTCTTGAAGGGAGCAGTGATGACGGGATCAGCTGGCAAGTTTTGGACAAGCAAACCTCTCAGTTCTTTGAAGACCGTTTCCAGCGTAGAACATACACA
species | Glycine max |
transcript | GLYMA03G40660.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TATGAGTTGATGTCAGCCAATGATGCACCAGAAAGGGATCCAATGGACTG GATTCTTGAAGGGAGCAGTGATGACGGGATCAGCTGGCAAGTTTTGGACAAEST: gi|15000214|gb|BI321028.1|BI321028
genomic: TATGAGTTGATGTCAGCCAATGATGCACCAGAAAGGGATCCAATGGACTGgtatggactt ... actttcccagGATTCTTGAAGGGAGCAGTGATGACGGGATCAGCTGGCAAGTTTTGGACAA
EST: TATGAGTTGATGTCAGCCAATGATGCACCAGAAAGGGATCCAATGGACTG GATTCTTGAAGGGAGCAGTGATGACGGGATCAGCTGGCAAGTTTTGGACAAEST: gi|5509854|gb|AI856412.1|AI856412
genomic: TATGAGTTGATGTCAGCCAATGATGCACCAGAAAGGGATCCAATGGACTGgtatggactt ... actttcccagGATTCTTGAAGGGAGCAGTGATGACGGGATCAGCTGGCAAGTTTTGGACAA
EST: TATGAGTTGATGTCAGCCAATGATGCACCAGAAAGGGATCCAATGGACTG GATTCTTGAAGGGAGCAGTGATGACGGGATCAGCTGGCAAGTTTTGGACAAEST: gi|209724361|gb|BW658157.1|BW658157
genomic: TATGAGTTGATGTCAGCCAATGATGCACCAGAAAGGGATCCAATGGACTGgtatggactt ... actttcccagGATTCTTGAAGGGAGCAGTGATGACGGGATCAGCTGGCAAGTTTTGGACAA
EST: ATGATGCACCAGAAAGGGATCCAATGGACTG GATTCTTGAAGGGAGCAGTGATGACGGGATCAGCTGGCAAGTTTTGGACAAEST: gi|192313084|gb|FK003694.1|FK003694
genomic: ATGATGCACCAGAAAGGGATCCAATGGACTGgtatggactt ... actttcccagGATTCTTGAAGGGAGCAGTGATGACGGGATCAGCTGGCAAGTTTTGGACAA
EST: TCCAATGGACTG GATTCTTGAAGGGAGCAGTGATGACGGGATCAGCTGGCAAGTTTTGGACAAEST: gi|5509855|gb|AI856413.1|AI856413
genomic: TCCAATGGACTGgtatggactt ... actttcccagGATTCTTGAAGGGAGCAGTGATGACGGGATCAGCTGGCAAGTTTTGGACAA
EST: TATGAGTTGATGTCAGCCAATGATGCACCAGAAAGGGATCCAATGGACTG GATTCTTGAAGGGAGCAGTGATGACGGGATCAGCTGGCAAGTTTTGGACAAEST: gi|192313085|gb|FK003695.1|FK003695
genomic: TATGAGTTGATGTCAGCCAATGATGCACCAGAAAGGGATCCAATGGACTGgtatggactt ... actttcccagGATTCTTGAAGGGAGCAGTGATGACGGGATCAGCTGGCAAGTTTTGGACAA
EST: TCCAATGGACTG GATTCTTGAAGGGAGCAGTGATGACGGGATCAGCTGGCAAGTTTTGGACAA
genomic: TCCAATGGACTGgtatggactt ... actttcccagGATTCTTGAAGGGAGCAGTGATGACGGGATCAGCTGGCAAGTTTTGGACAA
gttagtaaagcaagtgctgtgtattcatgatcttgcggatatgttactttcccagGATTCTTGAAGGGAGCAGTGATGACGGGATCAGCTGGCAAGTTTTGGACAAGCAAACCTCTCAGTTCTTTGAAGACCGTTTCCAGCGTAGAACATACACA
ttactttccc CT-rich tract
atatgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaccttttctttgctttgtaatgagttgtcatgcataagcttcagttagtaaagcaagtgctgtgtattcatgatcttgcggatatgttactttcccagGATTCTTGAAGGGAGCAGTGATGACGGGATCAGCTGGCAAGTTTTGGACAAGCAAACCTCTCAGTTCTTTGAAGACCGTTTCCAGCGTAGAACATACACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - tgctttg
- - - - - - - - - - - - - - -tcatgca
- - - - - - - - - - - - - - - - - - - -gcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - -caagtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgatc