1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
...catcatttcatctccaatgaccactgtcattcgttcttactgtttgtaagtagtgtgaaaagaaaatcatgtgtaatttcagcggtgtccttttgtgtagGAAGAATGATGAAGACTGGAAAATGGGTGATATTGTCCACACATTAACAAACAGAAGGTGGCTGGAAAAATGTGTAGCTTATGCTGAAAGTCATGACCAG
species | Glycine max |
transcript | GLYMA03G35020.2 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GATTATCGCCTGCACATGGCCATTGCAGACAAGTGGATTGAGATTCTCAA GAAGAATGATGAAGACTGGAAAATGGGTGATATTGTCCACACATTAACAAAEST: gi|151398683|gb|EV268554.1|EV268554
genomic: GATTATCGCCTGCACATGGCCATTGCAGACAAGTGGATTGAGATTCTCAAgtaacctttt ... ttttgtgtagGAAGAATGATGAAGACTGGAAAATGGGTGATATTGTCCACACATTAACAAA
EST: GATTATCGCCTGCACATGGCCATTGCAGACAAGTGGATTGAGATTCTCAA GAAGAATGATGAAGACTGGAAAATGGGTGATATTGTCCACACATTAACAAAEST: gi|20448926|gb|BQ253050.1|BQ253050
genomic: GATTATCGCCTGCACATGGCCATTGCAGACAAGTGGATTGAGATTCTCAAgtaacctttt ... ttttgtgtagGAAGAATGATGAAGACTGGAAAATGGGTGATATTGTCCACACATTAACAAA
EST: GATTATCGCCTGCACATGGCCATTGCAGACAAGTGGATTGAGATTCTCAA GAATAATTATGAAGACTGGAAAATGGGTGATATTGTCCACACATTAACAAA
genomic: GATTATCGCCTGCACATGGCCATTGCAGACAAGTGGATTGAGATTCTCAAgtaacctttt ... ttttgtgtagGAAGAATGATGAAGACTGGAAAATGGGTGATATTGTCCACACATTAACAAA
gtaagtagtgtgaaaagaaaatcatgtgtaatttcagcggtgtccttttgtgtagGAAGAATGATGAAGACTGGAAAATGGGTGATATTGTCCACACATTAACAAACAGAAGGTGGCTGGAAAAATGTGTAGCTTATGCTGAAAGTCATGACCAG
tgtcctttt CT-rich tract
aaaagaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catcatttcatctccaatgaccactgtcattcgttcttactgtttgtaagtagtgtgaaaagaaaatcatgtgtaatttcagcggtgtccttttgtgtagGAAGAATGATGAAGACTGGAAAATGGGTGATATTGTCCACACATTAACAAACAGAAGGTGGCTGGAAAAATGTGTAGCTTATGCTGAAAGTCATGACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - catctcc
- - - - - - - - -tgaccac
- - - - - - - - - - - - -gtcattc
- - - - - - - - - - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - tagtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgtg