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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttaacgtcgtgactttcttaattttttgtttatatatattatgataaacataaacaattgcaaatttcgtctaatgttgattcttttgtctgaatttcagCCGGCGGTTCCTCAACAAAACTATGCACAACCTGTGGCTGCAGCCCCTGCACAGCAACCTGCTGCGGTTCCTCAAGCTTATTACGGGAGTTATTATTGAG

Basic information

species Glycine max
transcript GLYMA03G32410.1
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14991751|gb|BI317424.1|BI317424
EST:     TTCCACAAAGTACTGCATACGGAGCCTATCCTCCTGCATATCCTGCACAG                         CCGGCGGTTCCTCAACAAAACTATGCACAACCTGTGGCTGCAGCCCCTGCA
genomic: TTCCACAAAGTACTGCATACGGAGCCTATCCTCCTGCATATCCTGCACAGgtgcacagca ... tgaatttcagCCGGCGGTTCCTCAACAAAACTATGCACAACCTGTGGCTGCAGCCCCTGCA
EST: gi|7147266|gb|AW509188.1|AW509188
EST:     TTCCACAAAGTACTGCATACGGAGCCTATCCTCCTGCATATCCTGCACAG                         CCGGCGGTTCCTCAACAAAACTATGCACAACCTGTGGCTGCAGCCCCTGCA
genomic: TTCCACAAAGTACTGCATACGGAGCCTATCCTCCTGCATATCCTGCACAGgtgcacagca ... tgaatttcagCCGGCGGTTCCTCAACAAAACTATGCACAACCTGTGGCTGCAGCCCCTGCA
EST: gi|7924613|gb|AW830639.1|AW830639
EST:     TTCCACAAAGTACTGCATACGGAGCCTATCCTCCTGCATATCCTGCACAG                         CCGGCGGTTCCTCAACAAAACTATGCACAACCTGTGGCTGCAGCCCCTGCA
genomic: TTCCACAAAGTACTGCATACGGAGCCTATCCTCCTGCATATCCTGCACAGgtgcacagca ... tgaatttcagCCGGCGGTTCCTCAACAAAACTATGCACAACCTGTGGCTGCAGCCCCTGCA
EST: gi|254341006|gb|GR854734.1|GR854734
EST:     TTCCACAAAGTACTGCATACGGAGCCTATCCTCCTGCATATCCTGCACAG                         CCGGCGGTTCCTCAACAAAACTATGCACAACCTGTGGCTGCAGCCCCTGCA
genomic: TTCCACAAAGTACTGCATACGGAGCCTATCCTCCTGCATATCCTGCACAGgtgcacagca ... tgaatttcagCCGGCGGTTCCTCAACAAAACTATGCACAACCTGTGGCTGCAGCCCCTGCA
EST: gi|151402465|gb|EV272278.1|EV272278
EST:     TTCCACAAAGTACTGCATACGGAGCCTATCCTCCTGCATATCCTGCACAG                         CCGGCGGTTCCTCAACAAAACTATGCACAACCTGTGGCTGCAGCCCCTGCA
genomic: TTCCACAAAGTACTGCATACGGAGCCTATCCTCCTGCATATCCTGCACAGgtgcacagca ... tgaatttcagCCGGCGGTTCCTCAACAAAACTATGCACAACCTGTGGCTGCAGCCCCTGCA
EST: gi|51335228|gb|CO979094.1|CO979094
EST:     TTCCACAAAGTACTGCATACGGAGCCTATCCTCCTGCATATCCTGCACAG                         CCGGCGGTTCCTCAACAAAACTATGCACAACCTGTGGCTGCAGCCCCTGCA
genomic: TTCCACAAAGTACTGCATACGGAGCCTATCCTCCTGCATATCCTGCACAGgtgcacagca ... tgaatttcagCCGGCGGTTCCTCAACAAAACTATGCACAACCTGTGGCTGCAGCCCCTGCA
EST: gi|51343099|gb|CO983832.1|CO983832
EST:     TTCCACAAAGTACTGCATACGGAGCCTATCCTCCTGCATATCCTGCACAG                         CCGGCGGTTCCTCAACAAAACTATGCACAACCTGTGGCTGCAGCCCCTGCA
genomic: TTCCACAAAGTACTGCATACGGAGCCTATCCTCCTGCATATCCTGCACAGgtgcacagca ... tgaatttcagCCGGCGGTTCCTCAACAAAACTATGCACAACCTGTGGCTGCAGCCCCTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaacataaacaattgcaaatttcgtctaatgttgattcttttgtctgaatttcagCCGGCGGTTCCTCAACAAAACTATGCACAACCTGTGGCTGCAGCCCCTGCACAGCAACCTGCTGCGGTTCCTCAAGCTTATTACGGGAGTTATTATTGAG
                                   ttcttttgtct  CT-rich tract
     taaacaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttaacgtcgtgactttcttaattttttgtttatatatattatgataaacataaacaattgcaaatttcgtctaatgttgattcttttgtctgaatttcagCCGGCGGTTCCTCAACAAAACTATGCACAACCTGTGGCTGCAGCCCCTGCACAGCAACCTGCTGCGGTTCCTCAAGCTTATTACGGGAGTTATTATTGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - gtgactt
- - - - - - - - - - - - - - - - - - - - - gataaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - caattgc