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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tataattttgctgataaaaaaaaaaaacgagcataacttggatgtgctttaaatgctttcataagctctgtcatcgctctgaatcaattgacatttacagGTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGACTAGAACCAAACTCATTGCAGTTATCTGGGTCAACAAAGACTGTGCTTA

Basic information

species Glycine max
transcript GLYMA03G27460.2
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51337485|gb|CO981351.1|CO981351
EST:     CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAG                         GTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
genomic: CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAGgtaaataaca ... acatttacagGTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
EST: gi|6134767|gb|AW133160.1|AW133160
EST:     AATTACATTTCAGAATTCTGTAGATAAGAAAGATTACATACGAATAAAAG                         GT-GTGAACTTCGGTACCACT
genomic: AATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAA-Ggtaaataaca ... acatttacagGTTGTGAACTTCGGTACCACT
EST: gi|9899023|gb|BE607991.1|BE607991
EST:     CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAG                         GTTGTGAACTTCGGTACCACTGCCGTGAACCTCAGAATCTCTCTTGACGGA
genomic: CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAGgtaaataaca ... acatttacagGTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
EST: gi|12496135|gb|BG046912.1|BG046912
EST:     CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAG                         GTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
genomic: CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAGgtaaataaca ... acatttacagGTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
EST: gi|298166525|gb|HO009964.1|HO009964
EST:     CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAG                         GTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
genomic: CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAGgtaaataaca ... acatttacagGTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
EST: gi|9899207|gb|BE608105.1|BE608105
EST:     CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAG                         GTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
genomic: CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAGgtaaataaca ... acatttacagGTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
EST: gi|209697031|gb|BW667021.1|BW667021
EST:     CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAG                         GTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
genomic: CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAGgtaaataaca ... acatttacagGTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
EST: gi|51335508|gb|CO979374.1|CO979374
EST:     CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAG                         GTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
genomic: CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAGgtaaataaca ... acatttacagGTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
EST: gi|22929130|gb|BU546269.1|BU546269
EST:     CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAG                         GTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
genomic: CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAGgtaaataaca ... acatttacagGTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
EST: gi|16104856|gb|BI892596.1|BI892596
EST:     CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAG                         GTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
genomic: CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAGgtaaataaca ... acatttacagGTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
EST: gi|10710450|gb|BF010168.1|BF010168
EST:     CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAG                         GTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
genomic: CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAGgtaaataaca ... acatttacagGTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
EST: gi|23734204|gb|BU765335.1|BU765335
EST:     CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAG                         GTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
genomic: CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAGgtaaataaca ... acatttacagGTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
EST: gi|21256238|gb|BQ453126.1|BQ453126
EST:     CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAG                         GTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
genomic: CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAGgtaaataaca ... acatttacagGTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctttaaatgctttcataagctctgtcatcgctctgaatcaattgacatttacagGTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGACTAGAACCAAACTCATTGCAGTTATCTGGGTCAACAAAGACTGTGCTTA
                                        aattgac  putative branch site (score: 3)
           tttcataa  TA-rich tract