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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaatctttgtacatccgttttgcttatttgcttgtctctggcaagtgacaacacttaaaatgtatacacatgactgaattttgaaacagGTACAAAGGGAGTTCCATTTACCTCCTGGCGATTTTCCAAATGTAGAGTTTTTCAGAGAGAGATTGAGTGGTTACAATATTGATAAGTTTGAAAAATTGA

Basic information

species Glycine max
transcript GLYMA02G46350.2
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208149410|gb|GD944572.1|GD944572
EST:     CTAAAGCTCAACAAAAGCTCATCGATAATTTGGCAGCTGAATTTGGAAAG                         GTACAAAGGGAGTTCCATTTACCTCCTGGCGATTTTCCAAATGTAGAGTTT
genomic: CTAAAGCTCAACAAAAGCTCATCGATAATTTGGCAGCTGAATTTGGAAAGgtatgaatct ... tttgaaacagGTACAAAGGGAGTTCCATTTACCTCCTGGCGATTTTCCAAATGTAGAGTTT
EST: gi|51343198|gb|CO983931.1|CO983931
EST:     CTAAAGCTCAACAAAAGCTCATCGATAATTTGGCAGCTGAATTTGGAAAG                         GTACAAAGGGAGTTCCATTTACCTCCTGGCGATTTTCCAAATGTAGAGTTT
genomic: CTAAAGCTCAACAAAAGCTCATCGATAATTTGGCAGCTGAATTTGGAAAGgtatgaatct ... tttgaaacagGTACAAAGGGAGTTCCATTTACCTCCTGGCGATTTTCCAAATGTAGAGTTT
EST: gi|192313377|gb|FK005149.1|FK005149
EST:     CTAAAGCTCAACAAAAGCTCATCGATAATTTGGCAGCCGAATTTGGAAAG                         GTACAAAGGGAGTTCCATTTACCTCCTGGCGATTTTCCAAATGTAGAGTTT
genomic: CTAAAGCTCAACAAAAGCTCATCGATAATTTGGCAGCTGAATTTGGAAAGgtatgaatct ... tttgaaacagGTACAAAGGGAGTTCCATTTACCTCCTGGCGATTTTCCAAATGTAGAGTTT
EST: gi|13481375|gb|BG510718.1|BG510718
EST:     CTAAAGCTCAACAAAAGCTCATCGATAATTTGGCAGCTGAATTTGGAAAG                         GTACAAAGGGAGTTCCATTTA
genomic: CTAAAGCTCAACAAAAGCTCATCGATAATTTGGCAGCTGAATTTGGAAAGgtatgaatct ... tttgaaacagGTACAAAGGGAGTTCCATTTA
EST: gi|192313376|gb|FK005148.1|FK005148
EST:     CTAAAGCTCAACAAAAGCTCATCGATAATTTGGCAGCCGAATTTGGAAAG                         GTACAAAGGGAGTTCCATTTACCTCCTGGCGATTTTCCAAATGTAGAGTTT
genomic: CTAAAGCTCAACAAAAGCTCATCGATAATTTGGCAGCTGAATTTGGAAAGgtatgaatct ... tttgaaacagGTACAAAGGGAGTTCCATTTACCTCCTGGCGATTTTCCAAATGTAGAGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctctggcaagtgacaacacttaaaatgtatacacatgactgaattttgaaacagGTACAAAGGGAGTTCCATTTACCTCCTGGCGATTTTCCAAATGTAGAGTTTTTCAGAGAGAGATTGAGTGGTTACAATATTGATAAGTTTGAAAAATTGA
                  acttaaaatgtata  TA-rich tract