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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgattatatgttgtgattaagcaattatgatgaatattaatatgatattttttttcatgatcattgatttagtactgaatggttcttgaaattattgttattttcattttggttactttctgctcagAGAAATCTGATCCGAGAGGCTACAGCTTTTCTCCTGGATGTTTTAAAGCCAAATCTACCAGAACATGGGTTCCTTCAGACAAAG

Basic information

species Glycine max
transcript GLYMA02G42560.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G42560.1 (Glycine max), 3'ss of exon 15
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 3'ss of exon 15
gttgattatatgttgtgattaagcaattatgatgaatattaatatgatattttttttcatgatcattgatttagtactgaatggttcttgaaattattgttattttcattttggttactttctgctcagAGAAATCTGATCCGAGAGGCTACAGCTTTTCTCCTGGATGTTTTAAAGCCAAATCTACCAGAACATGGGTTCCTTCAGACAAAG
                          || | ||  || | |||      |   | |  |  | | ||| |||  |||       |||    | || |   |    | |   ||   | ||| |   ||||||||  |||| || ||||| |||||||| || ||||||||||||||||||||  | || || ||||  || ||||| || |||
--------------------gtatccttttaattcatttcaatgcatagtcggtatgtaatacctttgcttttttaccatgaaattc----agttgtgtcttgccttaccatgcccattttttaa-cagAGAAACATGATACGTGAGGCAACAGCTTTCCTGCTGGATGTTTTAAAGCCAAACTTGCCGGAGCATGCTTTTCTTCAAACCAAG

upper sequence: GLYMA02G42560.1 (Glycine max), 3'ss of exon 15
lower sequence: GRMZM2G057576_T02 (Zea mays), 3'ss of exon 13
gttgattatatgttgtgattaagcaa-ttatgatgaatatta--atatgatattttttttcat-----gatcattgatttagtactgaatgg-ttcttgaaattattgttattttcattttgg-ttactttctgct-cagAGAAATCTGATCCGAGAGGCTACAGCTTTTCTCCTGGATGTTTTAAAGCCAAATCTACCAGAACATGGGTTCCTTCAGACAAAG
||   || | | || | |  |   || || |  |   || ||  |||| | ||| ||| |  |      |   |  ||  ||| ||    |  |||   |  | |||    ||||   ||||| |||| |||| |  ||||||||| |||| || ||||||||||||||||| ||||||||| | ||||||||  | || || ||||  || ||||| || |||
gtatcttttgtattattagcatataaattcttttctgtagtagtatataaaattctttgttgtctgggaactctccatgcagttcttttagtcttcactatgtaatttggttttttgctttggcttacattcttcaacagAGAAATATGATACGGGAGGCTACAGCTTTTCTGCTGGATGTTCTGAAGCCAAACTTGCCGGATCATGCTTTTCTTCAAACCAAG

upper sequence: GLYMA02G42560.1 (Glycine max), 3'ss of exon 15
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 3'ss of exon 15
gttgattatatgttgtgattaagcaattatgatgaatattaatatgatattttttttcatgatcattgatttagtactgaatggttcttgaaattattgttattttc-attttggttactttc---tgctcagAGAAATCTGATCCGAGAGGCTACAGCTTTTCTCCTGGATGTTTTAAAGCCAAATCTACCAGAACATGGGTTCCTTCAGACAAAG
                                |||| |   | |  ||| | | |      |    |   | | ||||   || |||   | |    | | || | | | | |  |||||||    |  |||||||||||||||||| || || || ||||| || ||||||||| | ||||||||| |||| || ||||  || || || || |||
-------------------------------gtgaacacgtagaatatactgtgtacataaaattgtatctcattact---tgtttcacaagagagctatcatgtgctaatgtacttacttttgcatattcagAGAAATCTGATCCGTGAAGCGACTGCTTTCCTTCTGGATGTTCTGAAGCCAAATTTACCCGAGCATGCTTTTCTGCAAACTAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactgaatggttcttgaaattattgttattttcattttggttactttctgctcagAGAAATCTGATCCGAGAGGCTACAGCTTTTCTCCTGGATGTTTTAAAGCCAAATCTACCAGAACATGGGTTCCTTCAGACAAAG
                                           ctttctgctc  CT-rich tract
          ttcttgaaattattgt  TA-rich tract