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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacatctgtaatgttgtacctctgcttgcttcttggcaatttccattgttaggttccaagttttttgtaactatatgcatacagGTCTATGAAGCTGCTCAGCAAGCAGCAATTCATAACACTATCATGAAGTTTCCCGATAAATATTCAACTGTTGTGGGAGAGCGAGGGCTAAAG

Basic information

species Glycine max
transcript GLYMA02G40490.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G40490.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv06s0004g08350.t01 (Vitis vinifera), 3'ss of exon 18
-----------------gtaacatctgtaatgttgtacctctgc---ttgcttcttggcaatttccattgttaggttccaagttttttgtaactatatgcatacagGTCTATGAAGCTGCTCAGCAAGCAGCAATTCATAACACTATCATGAAGTTTCCCGATAAATATTCAACTGTTGTGGGAGAGCGAGGGCTAAAG
                  |||  |   ||||||  |   ||||    |       || ||   |   |||||   ||  |    | ||  || |||      |||||| ||||| |||||||  |  |||||||||||| ||||||||||||| || || || ||||||||||||||||||||||| || ||||| |||
gtttgaaacgaactctgttaattttactaatgtgttttatctgaaaatcatgcaatgtcatgcttggttgttgtattagactaatatttaaattattgctccacagGTGTATGATGCTGCTCGACGTGCAGCAATTCATGACACTATCATGAATTTCCCTGAGAAATATTCAACTGTTGTGGGAGAACGGGGGCTCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193644846|gb|FK592054.1|FK592054
EST:     CAATATTTCATAACATTCACTATGGTCGGCTTTCTGCAACGGAAGAGGAG                         GTCTATGAAGCTGCTCAGCAAGCAGCAATTCATAACACTATCATGAAGTTT
genomic: CAATATTTCATAACATTCACTATGGTCGGCTTTCTGCAACGGAAGAGGAGgtaacatctg ... atgcatacagGTCTATGAAGCTGCTCAGCAAGCAGCAATTCATAACACTATCATGAAGTTT
EST: gi|51341587|gb|CO982904.1|CO982904
EST:     CAATATTTCATAACATTCACTATGCTCGGCTTTCTGCAACGGAAGAGGAG                         GTCTATGAAGCTGCTCAGCAAGCAGCAATTCATAACACTATCATGAAGTTT
genomic: CAATATTTCATAACATTCACTATGGTCGGCTTTCTGCAACGGAAGAGGAGgtaacatctg ... atgcatacagGTCTATGAAGCTGCTCAGCAAGCAGCAATTCATAACACTATCATGAAGTTT
EST: gi|193689046|gb|FK630067.1|FK630067
EST:     CAATATTTCATAACATTCACTATGGTCGGCTTTCTGCAACGGAAGAGGAG                         GTCTATGAAGCTGCTCAGCAAGCAGCAATTCATAACACTATCATGAAGTTT
genomic: CAATATTTCATAACATTCACTATGGTCGGCTTTCTGCAACGGAAGAGGAGgtaacatctg ... atgcatacagGTCTATGAAGCTGCTCAGCAAGCAGCAATTCATAACACTATCATGAAGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttggcaatttccattgttaggttccaagttttttgtaactatatgcatacagGTCTATGAAGCTGCTCAGCAAGCAGCAATTCATAACACTATCATGAAGTTTCCCGATAAATATTCAACTGTTGTGGGAGAGCGAGGGCTAAAG
                                   ttgtaac  putative branch site (score: 2)
                               ttttttgtaactatat  TA-rich tract