1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
...tgtgataatcgtttttgttggaagattaataatgtgaattcagtaaatgcaactgcaaatcacttgtaagcttctatggtgatttgttattatcttgcagGTTAATACACATCTTACACCACGCCCAATATTACTTACCCGGCATGGAGAAAGTCAGTATAATGTGAGAGGCAGAATTGGAGGAGACTCTGCATTAAG
species | Glycine max |
transcript | GLYMA02G39390.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GTGAAAAATATCAGTGGCTACCTACCTGGGCGGATAGTATGTTTCTTG GTTAATACACATCTTACACCACGCCCAATATTACTTACCCGGCATGGAGAAEST: gi|193656517|gb|FK605005.1|FK605005
genomic: GTGAAAAATATCAGTGGCTACCTACCTGGGCGGATAGTATGTTTCTTGgtaagtttct ... tatcttgcagGTTAATACACATCTTACACCACGCCCAATATTACTTACCCGGCATGGAGAA
EST: ATAGTATGTTTCTTG GTTAATACACATCTTACACCACGCCCAATATTACTTACCCGGCATGGAGAAEST: gi|193305438|gb|FK273259.1|FK273259
genomic: ATAGTATGTTTCTTGgtaagtttct ... tatcttgcagGTTAATACACATCTTACACCACGCCCAATATTACTTACCCGGCATGGAGAA
EST: TAGTATGTTTCTTG GTTAATACACATCTTACACCACGCCCAATATTACTTACCCGGCATGGAGAAEST: gi|23728948|gb|BU762545.1|BU762545
genomic: TAGTATGTTTCTTGgtaagtttct ... tatcttgcagGTTAATACACATCTTACACCACGCCCAATATTACTTACCCGGCATGGAGAA
EST: GTGAAAAATATCAGTGGCTACCTACCTGGGCGGATAGTATGTTTCTTG GTTAATACACATCTTACACCACGCCCAATATTACTTACCCGGAATGGAGAA
genomic: GTGAAAAATATCAGTGGCTACCTACCTGGGCGGATAGTATGTTTCTTGgtaagtttct ... tatcttgcagGTTAATACACATCTTACACCACGCCCAATATTACTTACCCGGCATGGAGAA
aatgcaactgcaaatcacttgtaagcttctatggtgatttgttattatcttgcagGTTAATACACATCTTACACCACGCCCAATATTACTTACCCGGCATGGAGAAAGTCAGTATAATGTGAGAGGCAGAATTGGAGGAGACTCTGCATTAAG
ttatctt CT-rich tract
atttgttattatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgataatcgtttttgttggaagattaataatgtgaattcagtaaatgcaactgcaaatcacttgtaagcttctatggtgatttgttattatcttgcagGTTAATACACATCTTACACCACGCCCAATATTACTTACCCGGCATGGAGAAAGTCAGTATAATGTGAGAGGCAGAATTGGAGGAGACTCTGCATTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - ttgttgg
- - - - - - - - - - - - - - - - - tgaattc
- - - - - - - - - - - - - - - - - - - - - - - - -caactgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatttg