1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtagaataagataccaaagtttcaactactgttagaattcttgaaataatcgccacaggtttgcaatgtctccaccaaccaacttgagcttattcttcttgcagATTGCAATATCCAATCCAAGTCCAGAAGTTCTGCTTACCTTGTCTAGATCCGGTCTGGTGGAGTTGATAGGCAAAGAATGGTACTTTGTGAGAGTACATG
species | Glycine max |
transcript | GLYMA02G10590.2 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TTCAGGCTTTGAAAGACTTGTATCAGGAGTACAAATTACGGGACATTCAG ATTGCAATATCCAATCCAAGTCCAGAAGTTCTGCTTACCTTGTCTAGATCCEST: gi|26047758|gb|CA784450.1|CA784450
genomic: TTCAGGCTTTGAAAGACTTGTATCAGGAGTACAAATTACGGGACATTCAGgtagaataag ... cttcttgcagATTGCAATATCCAATCCAAGTCCAGAAGTTCTGCTTACCTTGTCTAGATCC
EST: ATTACGGGACATTCAG ATTGCAATATCCAATCCAAGTCCAGAAGTTCTGCTTACCTTGTCTAGATCCEST: gi|254333564|gb|GR848482.1|GR848482
genomic: ATTACGGGACATTCAGgtagaataag ... cttcttgcagATTGCAATATCCAATCCAAGTCCAGAAGTTCTGCTTACCTTGTCTAGATCC
EST: TTCAGGCTTTGAAAGACTTGTATCAGGAGTACAAATTACGGGACATTCAG ATTGCAATATCCAATCCAAGTCCAGAAGTTCTGCTTACCTTGTCTAGATCC
genomic: TTCAGGCTTTGAAAGACTTGTATCAGGAGTACAAATTACGGGACATTCAGgtagaataag ... cttcttgcagATTGCAATATCCAATCCAAGTCCAGAAGTTCTGCTTACCTTGTCTAGATCC
tcgccacaggtttgcaatgtctccaccaaccaacttgagcttattcttcttgcagATTGCAATATCCAATCCAAGTCCAGAAGTTCTGCTTACCTTGTCTAGATCCGGTCTGGTGGAGTTGATAGGCAAAGAATGGTACTTTGTGAGAGTACATG
cttattcttcttgc CT-rich tract
ttattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagaataagataccaaagtttcaactactgttagaattcttgaaataatcgccacaggtttgcaatgtctccaccaaccaacttgagcttattcttcttgcagATTGCAATATCCAATCCAAGTCCAGAAGTTCTGCTTACCTTGTCTAGATCCGGTCTGGTGGAGTTGATAGGCAAAGAATGGTACTTTGTGAGAGTACATG
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