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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttttccactacagtttgtttatagctaaactatgaaagggataatgatgataattctactttcttctaatcatgtggttatgacttgtgatgactgcagCTGTGACCTACATAGATTCTAGTGCTGTTCAGGCTTTGAAAGACTTGTATCAGGAGTACAAATTACGGGACATTCAG

Basic information

species Glycine max
transcript GLYMA02G10590.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G10590.2 (Glycine max), 3'ss of exon 14
lower sequence: LOC_Os09g06499.1 (Oryza sativa), 3'ss of exon 16
------------------------------------------gttttccactacagtttgtttatagctaaa---------ctatgaaagggataatgatgataattctactttcttctaatcatgtggttatgacttgtgatgac--tgcagCTGTGACCTACATAGATTCTAGTGCTGTTCAGGCTTTGAAAGACTTGTATCAGGAGTACAAATTACGGGACATTCAG
                                           ||||     | |   |||||  |   |||         | || ||     | ||||  || |      |||  |  | |  |   | ||  ||   |  |||   ||||||||| || ||||| ||||| ||||||||||||||| | || ||||||||||| || ||||     ||  | || |||
gtaagatctttttcttatgttacatgatatgaggcacattaatttttttgtcatatcatgtttgcataaaaatgtttctttcaattaagaaactcatgagcatcaagtagatttactagactagttaagata-aacaaatactgaacatgcagCTGTTACATACATCGATTCAAGTGCTGTTCAGGCTCTCAAGGACTTGTATCAAGAATACAGGGATCGCCATATCCAG

upper sequence: GLYMA02G10590.2 (Glycine max), 3'ss of exon 14
lower sequence: Vv13s0019g00010.t01 (Vitis vinifera), 3'ss of exon 15
gttttccactacagtttgtttatagctaaactatgaaagggataatgatgataattc--tactttcttctaatcatgtggttatgac---ttgtgatgactgcagCTGTGACCTACATAGATTCTAGTGCTGTTCAGGCTTTGAAAGACTTGTATCAGGAGTACAAATTACGGGACATTCAG
  | |||| |  ||  | |   ||| | |  ||  ||    ||  |||||  | ||   | | |     |  | | ||| || |      ||    |   ||||||||| || ||  |||| || ||||| ||||| |||||||| ||||||||||| |||||||||| |||||| || |||
--tatcca-tgtagagtctccttagttca--taaaaataacattctgatggcagttgagtccctctcctttgttaagtgttttttctcctttccttttgttgcagCTGTTACATATGTAGACTCCAGTGCCGTTCAAGCTTTGAAGGACTTGTATCACGAGTACAAATCACGGGATATCCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254323183|gb|GR835791.1|GR835791
EST:     ACATGGACCTGAGGTTGAAAGAATTTATTTTGTGATTCTAGAGATGGCAC                         CTGTGACCTACATAGATTCTAGTGCTGTTCAGGCTTTGAAAGACTTGTATC
genomic: ACATGGACCTGAGGTTGAAAGAATTTATTTTGTGATTCTAGAGATGGCACgtaagtcttg ... atgactgcagCTGTGACCTACATAGATTCTAGTGCTGTTCAGGCTTTGAAAGACTTGTATC
EST: gi|22524497|gb|BU083308.1|BU083308
EST:     ACATGGACCTGAGGTTGAAAGAATTTATTTTGTGATTCTAGAGATGGCAC                         CTGTGACCTACATAGATTCTAGTGCTGTTCAGGCTTTGAAAGACTTGTATC
genomic: ACATGGACCTGAGGTTGAAAGAATTTATTTTGTGATTCTAGAGATGGCACgtaagtcttg ... atgactgcagCTGTGACCTACATAGATTCTAGTGCTGTTCAGGCTTTGAAAGACTTGTATC
EST: gi|254323182|gb|GR835790.1|GR835790
EST:     ACATGGACCTGAGGTTGAAAGAATTTATTTTGTGATTCTAGAGATGGCAC                         CTGTGACCTACATAGATTCTAGTGCTGTTCAGGCTTTGAAAGACTTGTATC
genomic: ACATGGACCTGAGGTTGAAAGAATTTATTTTGTGATTCTAGAGATGGCACgtaagtcttg ... atgactgcagCTGTGACCTACATAGATTCTAGTGCTGTTCAGGCTTTGAAAGACTTGTATC
EST: gi|254320749|gb|GR827198.1|GR827198
EST:     ACATGGACCTGAGGTTGAAAGAATTTATTTTGTGATTCTAGAGATGGCAC                         CTGTGACCTACATAGATTCTAGTGCTGTTCAGGCTTTGAAAGACTTGTATC
genomic: ACATGGACCTGAGGTTGAAAGAATTTATTTTGTGATTCTAGAGATGGCACgtaagtcttg ... atgactgcagCTGTGACCTACATAGATTCTAGTGCTGTTCAGGCTTTGAAAGACTTGTATC
EST: gi|51335397|gb|CO979263.1|CO979263
EST:     ACATGGACCTGAGGTTGAAAGAATTTATTTTGTGATTCTAGAGATGGCAC                         CTGTGACCTACATAGATTCTAGTGCTGTTCAGGCTTTGAAAGACTTGTATC
genomic: ACATGGACCTGAGGTTGAAAGAATTTATTTTGTGATTCTAGAGATGGCACgtaagtcttg ... atgactgcagCTGTGACCTACATAGATTCTAGTGCTGTTCAGGCTTTGAAAGACTTGTATC
EST: gi|254333564|gb|GR848482.1|GR848482
EST:     GAAAGAATTTATTTTGTGATTCTAGAGATGGCAC                         CTGTGACCTACATAGATTCTAGTGCTGTTCAGGCTTTGAAAGACTTGTATC
genomic: GAAAGAATTTATTTTGTGATTCTAGAGATGGCACgtaagtcttg ... atgactgcagCTGTGACCTACATAGATTCTAGTGCTGTTCAGGCTTTGAAAGACTTGTATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatgataattctactttcttctaatcatgtggttatgacttgtgatgactgcagCTGTGACCTACATAGATTCTAGTGCTGTTCAGGCTTTGAAAGACTTGTATCAGGAGTACAAATTACGGGACATTCAG
                   ttctaat  putative branch site (score: 2)
     ataattcta  TA-rich tract