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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaggatttttctctttcacttgcaagttgcaagcataagatagttcttcatagcttatatcacatacatcttaaatatctgtaatgttaaccttttgcagCGTGGAATTGATGCATTGCCTGGCATGACAATTCTTTCTGCGTGCTTAGAGACA

Basic information

species Glycine max
transcript GLYMA02G05950.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G05950.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv04s0023g02560.t01 (Vitis vinifera), 3'ss of exon 17
-----------gtcaggatttttctctttcacttgcaagttgcaagcataagatagttcttcatagctta-----tatcacatacatcttaaatatctgtaatgtt-aaccttttgcagCGTGGAATTGATGCATTGCCTGGCATGACAATTCTTTCTGCGTGCTTAGAGACA
            |||   ||  || |   || |    | ||   ||  ||  ||   | | ||| | | |     | |   | |  |  | | | ||  |  |||| ||   | ||||||||||  ||||||||||||| |||||||||||| | ||||| || |||||  | 
gtagaagctgattcacttttgctcgccagcattaaataatttgtagtttagtatttctttgcatggttcaaaatgtgttctacagttacttattttcctttttgtttaatgatgtgcagCGTGGGCTTGATGCATTGCCAGGCATGACAATTTTATCTGCCTGTTTAGAAGCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15589705|gb|BI674321.1|BI674321
EST:     TTACAAGACAAAAGTGGCCCGCCAG                         CGTGGAATTGATGCATTGCCTGGCATGACAATTCTTTCTGCGTGCTTAGAG
genomic: TTACAAGACAAAAGTGGAACGCCAGgtcaggattt ... ccttttgcagCGTGGAATTGATGCATTGCCTGGCATGACAATTCTTTCTGCGTGCTTAGAG
EST: gi|192329023|gb|FK021405.1|FK021405
EST:     CACTCTTTTGTTGTGGAGGGTTCATTTACAAGACAAAAGTGGAACGCCAG                         CGTGGAATTGATGCATTGCCTGGCATGACAATTCTTTCTGCGTGCTTAGAG
genomic: CACTCTTTTGTTGTGGAGGGTTCATTTACAAGACAAAAGTGGAACGCCAGgtcaggattt ... ccttttgcagCGTGGAATTGATGCATTGCCTGGCATGACAATTCTTTCTGCGTGCTTAGAG
EST: gi|6846005|gb|AW348295.1|AW348295
EST:     CACTCTTTTGTTGTGGAGGGTTCATTTACAAGACAAAAGTGGAACGCCAG                         CGTGGAATTGATGCATTGCCTGGCATGACAATTCTTTCTGCGTGCTTAGAG
genomic: CACTCTTTTGTTGTGGAGGGTTCATTTACAAGACAAAAGTGGAACGCCAGgtcaggattt ... ccttttgcagCGTGGAATTGATGCATTGCCTGGCATGACAATTCTTTCTGCGTGCTTAGAG
EST: gi|58020577|gb|CX707319.1|CX707319
EST:     CACTCTTTTGTTGTGGAGGGTTCATTTACAAGACAAAAGTGGAACGCCAG                         CGTGGAATTGATGCATTGCCTGGCATGACAATTCTTTCTGCGTGCTTAGAG
genomic: CACTCTTTTGTTGTGGAGGGTTCATTTACAAGACAAAAGTGGAACGCCAGgtcaggattt ... ccttttgcagCGTGGAATTGATGCATTGCCTGGCATGACAATTCTTTCTGCGTGCTTAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcatagcttatatcacatacatcttaaatatctgtaatgttaaccttttgcagCGTGGAATTGATGCATTGCCTGGCATGACAATTCTTTCTGCGTGCTTAGAGACA
                                       tgttaac  putative branch site (score: 2)
                                             ccttttgc  CT-rich tract
                  atacatcttaaatat  TA-rich tract