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gttatttcatttatgttttccaaaattgaggtttatattcttatattagctgttgggttgggtcacaattttccttttattcacaaatgatatattcaacagGGGATATTGGAGAGTGGCAACCTAATGGAAGCATGAAAATTATTGATCGGAAGAAGAATATATTTAAGCTTTCACAAGGAGAATATGTTGCTGTCGAAAA
species | Glycine max |
transcript | GLYMA01G43470.2 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: ACGTGAAGACCTCACTAAAGAGTTTCTGATTGATGAATGGTTCCATACAG GGGATATTGGAGAGTGGCAACCTAATGGAAGCATGAAAATTATTGATCGGAEST: gi|208127888|gb|GD924920.1|GD924920
genomic: ACGTGAAGACCTCACTAAAGAGGTTCTGATTGATGAATGGTTCCATACAGgttatttcat ... tattcaacagGGGATATTGGAGAGTGGCAACCTAATGGAAGCATGAAAATTATTGATCGGA
EST: GATGAATGGTTCCATACAG GGGATATTGGAGAGTGGCAACCTAACGGAAGCATGAAAATTATTGATCGGAEST: gi|254347181|gb|GR856851.1|GR856851
genomic: GATGAATGGTTCCATACAGgttatttcat ... tattcaacagGGGATATTGGAGAGTGGCAACCTAATGGAAGCATGAAAATTATTGATCGGA
EST: ACGTGAAGACCTCACTAAAGAGGTTCTGATTGATGAATGGTTCCATACAG GGGATATTGGAGAGTGGCAACCTAATGGAAGCATGAAAATTATTGATCGGAEST: gi|151396024|gb|EV265901.1|EV265901
genomic: ACGTGAAGACCTCACTAAAGAGGTTCTGATTGATGAATGGTTCCATACAGgttatttcat ... tattcaacagGGGATATTGGAGAGTGGCAACCTAATGGAAGCATGAAAATTATTGATCGGA
EST: ACGTGAAGACCTCACTAAAGAGGTTCTGATTGATGAATGGTTCCATACAG GGGATATTGGAGAGTGGCAACCTAATGGAAGCATGAAAATTATTGATCGGAEST: gi|22525607|gb|BU084418.1|BU084418
genomic: ACGTGAAGACCTCACTAAAGAGGTTCTGATTGATGAATGGTTCCATACAGgttatttcat ... tattcaacagGGGATATTGGAGAGTGGCAACCTAATGGAAGCATGAAAATTATTGATCGGA
EST: ACGTGAAGACCTCACTAAAGAGGTTCTGATTGATGAATGGTTCCATACAG GGGATATTGGAGAGTGGCAACCTAATGGAAGCATGAAAATTATTGATCGGAEST: gi|19270925|gb|BM887181.1|BM887181
genomic: ACGTGAAGACCTCACTAAAGAGGTTCTGATTGATGAATGGTTCCATACAGgttatttcat ... tattcaacagGGGATATTGGAGAGTGGCAACCTAATGGAAGCATGAAAATTATTGATCGGA
EST: GGTTCCATACAG GGGATATTGGAGAGTGGCAACCTAATGGAAGCATGAAAATTATTGATCGGAEST: gi|51342594|gb|CO983564.1|CO983564
genomic: GGTTCCATACAGgttatttcat ... tattcaacagGGGATATTGGAGAGTGGCAACCTAATGGAAGCATGAAAATTATTGATCGGA
EST: ANNTGAAGACCTCACTAAAGAGGTTCTGATTGATGAATGGTTCCATACAG GGGATATTGGAGAGTGGCAACCTAATGGAAGCATGAAAATTATTGATCGGAEST: gi|192295718|gb|FG990572.1|FG990572
genomic: ACGTGAAGACCTCACTAAAGAGGTTCTGATTGATGAATGGTTCCATACAGgttatttcat ... tattcaacagGGGATATTGGAGAGTGGCAACCTAATGGAAGCATGAAAATTATTGATCGGA
EST: ACGTGAAGACCTCACTAAAGAGGTTCTGATTGATGAATGGTTCCATACAG GGGATATTGGAGAGTGGCAACCTAATGGAAGCATGAAAATTATTGATCGGAEST: gi|120533313|gb|EH261446.1|EH261446
genomic: ACGTGAAGACCTCACTAAAGAGGTTCTGATTGATGAATGGTTCCATACAGgttatttcat ... tattcaacagGGGATATTGGAGAGTGGCAACCTAATGGAAGCATGAAAATTATTGATCGGA
EST: ACGTGAAGACCTCACTAAAGAGGTTCTGATTGATGAATGGTTCCATACAG GGGATATTGGAGAGTGGCAACCTAATGGAAGCATGAAAATTATTGATCGGAEST: gi|22525677|gb|BU084488.1|BU084488
genomic: ACGTGAAGACCTCACTAAAGAGGTTCTGATTGATGAATGGTTCCATACAGgttatttcat ... tattcaacagGGGATATTGGAGAGTGGCAACCTAATGGAAGCATGAAAATTATTGATCGGA
EST: ACGTGAAGACCTCACTAAAGAGGTTCTGATTGATGAATGGTTCCATACAG GGGATATTGGAGAGTGGCAACCTAATGGAAGCATGAAAATTATTGATCGGA
genomic: ACGTGAAGACCTCACTAAAGAGGTTCTGATTGATGAATGGTTCCATACAGgttatttcat ... tattcaacagGGGATATTGGAGAGTGGCAACCTAATGGAAGCATGAAAATTATTGATCGGA
agctgttgggttgggtcacaattttccttttattcacaaatgatatattcaacagGGGATATTGGAGAGTGGCAACCTAATGGAAGCATGAAAATTATTGATCGGAAGAAGAATATATTTAAGCTTTCACAAGGAGAATATGTTGCTGTCGAAAA
ttttattcacaaatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttatttcatttatgttttccaaaattgaggtttatattcttatattagctgttgggttgggtcacaattttccttttattcacaaatgatatattcaacagGGGATATTGGAGAGTGGCAACCTAATGGAAGCATGAAAATTATTGATCGGAAGAAGAATATATTTAAGCTTTCACAAGGAGAATATGTTGCTGTCGAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA