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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcagactttctagtgcaatgctattaataccaatagtttttcttagttaagacctttatgcttctgcattgctgtcaacagGTGTTCATGTGCTGCTCCCAATGAATTGAACCCAAGGGAACTGGATAATCTTCTGAGGCTGAATAAAG

Basic information

species Glycine max
transcript GLYMA01G32810.1
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207819790|gb|GD790494.1|GD790494
EST:     CTTACTCCCCCAAAGTGGACATGTGTGGAGAACTTATGGGATCAGAGCAG                         GTGTTCATGTGCTGCTCCCAATGAATTGAACCCAAGGGAACTGGATAATCT
genomic: CTTACTCCCCCAAAGTGGACATGTGTGGAGAACTTATGGGATCAGAGCAGgtgagcagac ... ctgtcaacagGTGTTCATGTGCTGCTCCCAATGAATTGAACCCAAGGGAACTGGATAATCT
EST: gi|192316761|gb|FK006464.1|FK006464
EST:     CTTACTCCCC-AAAGTGGACATGTGTGGAGA-CTTATGGGATCAGAGCAG                         -TGT-CATGTGCTGCTCCCA
genomic: CTTACTCCCCCAAAGTGGACATGTGTGGAGAACTTATGGGATCAGAGCAGgtgagcagac ... ctgtcaacagGTGTTCATGTGCTGCTCCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataccaatagtttttcttagttaagacctttatgcttctgcattgctgtcaacagGTGTTCATGTGCTGCTCCCAATGAATTGAACCCAAGGGAACTGGATAATCTTCTGAGGCTGAATAAAG
 tattaat  putative branch site (score: 2)
     aatagtttttctta  TA-rich tract