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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactgatttccttcctttgtgctctccagtaaaataatgaaggatagttttgtatttattagaacatgtttgtttgtgactttctttattttcttttttaatagAGAAATGTTAGCAAGAATTGGCACATTCCTTCTTCTTTTCCAAGTGATACTGTTATATCTGCTTACTATTCTCCCCATGTTGATAAATCCACTGAGCCAT

Basic information

species Glycine max
transcript GLYMA01G16370.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G16370.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv14s0066g01630.t01 (Vitis vinifera), 3'ss of exon 11
---gtaactgatttccttcctttgtgctctccagtaa-aataatgaaggatagtttt-gtatttattag-aacatgt---ttgtttgtgact-ttctttattttcttttttaat--agAGAAATGTTAGCAAGAATTGGCACATTCCTTCTTCTTTTCCAAGTGATACTGTTATATCTGCTTACTATTCTCCCCATGTTGATAAATCCACTGAGCCAT
    | |||   || | | | ||  | | | |  ||  |||  ||  | ||  ||   | | | ||| |   | | |   ||| || ||| | || |  ||| | || ||| ||  |||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||| ||||| ||    |||||||| || ||  | || || ||||| |
gtaattactatattacctgccttaggttttaccttattaattttgctgtattattgaagaaatcatttgtggcttatgcattgcttttgaatattatgaattcttttgttttatttagAGAAATGTGAGCAAGAACTGGCACATTCCTTCTTCTTTTCCAAGTGAAACAGTTATCTCTGCATATGCCTCTCCCCAAGTGGACCAGTCAACAGAGCCTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11688807|gb|BF596483.1|BF596483
EST:     AGTTGTCAGATTACATCCAAGAAATAAAACAAACTTTCTTCAATAAGCAT                         AGAAATGTTAGCAAGAATTGGCACATTCCTTCTTCTTTTCCAAGTGATACT
genomic: AGTTGTCAGATTACATCCAAGAAATAAAACAAACTTTCTTCAATAAGCATgtaactgatt ... tttttaatagAGAAATGTTAGCAAGAATTGGCACATTCCTTCTTCTTTTCCAAGTGATACT
EST: gi|19270376|gb|BM886632.1|BM886632
EST:     AGTTGTCAGATTACATCCAAGAAATAAAACAAACTTTCTTCAATAAGCAT                         AGAAATGTTAGCAAGAATTGGCACATTCCTTCTTCTTTTCCAAGTGATACT
genomic: AGTTGTCAGATTACATCCAAGAAATAAAACAAACTTTCTTCAATAAGCATgtaactgatt ... tttttaatagAGAAATGTTAGCAAGAATTGGCACATTCCTTCTTCTTTTCCAAGTGATACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtatttattagaacatgtttgtttgtgactttctttattttcttttttaatagAGAAATGTTAGCAAGAATTGGCACATTCCTTCTTCTTTTCCAAGTGATACTGTTATATCTGCTTACTATTCTCCCCATGTTGATAAATCCACTGAGCCAT
                       tttgtgactttcttta  CT-rich tract
                           tgactttctttatttt  TA-rich tract