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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acattataatttacctgttgtgttaatgtatgctttgactgatgactctgtttattgggattatctatatatattgctaattcatgaatatctcatgcagCTGTGTACACTTGAATTTGAGACACGTCGTGCATCATACTATTGGTTGTTGCATGCGTTAGGCATTTACCAACCTTATGTGTGGGAGTATTCAAGGTTGA

Basic information

species Glycine max
transcript GLYMA20G25120.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G25120.2 (Glycine max), 3'ss of exon 14
lower sequence: Vv15s0021g01230.t01 (Vitis vinifera), 3'ss of exon 14
----acattataatttacctgttgtgttaa-tgtatgctttgactgatgactctgtttattgggattatc-tatatatattgctaattcatgaatatctcatgcagCTGTGTACACTTGAATTTGAGACACGTCGTGCATCATACTATTGGTTGTTGCATGCGTTAGGCATTTACCAACCTTATGTGTGGGAGTATTCAAGGTTGA
     |   ||    |  || ||   |||  || ||| |||  ||  | | |     | |     || || | |||  ||  ||  ||     | ||||  ||||||| || || ||||||||||||||||| ||||| || ||||| ||||| || |||| ||| ||  ||||||| || |||||||||||||| ||  ||||||
ttttcctccatcggatgactatttccttacctgcatgttttt-cttttaaattgaaatgtgacatttgtcatttatccatctctggtt-----aaatcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTACATGTGTTGGGTCTTTACCATCCCTATGTGTGGGAGTACTCGCGGTTGA

upper sequence: GLYMA20G25120.2 (Glycine max), 3'ss of exon 14
lower sequence: Vv01s0011g03740.t01 (Vitis vinifera), 3'ss of exon 14
acattataatttacctgttgtgttaatgtatgctttgactgatgactctgtttattgggattat--ctatatatattgctaattcatgaatatctcatgcagCTGTGTACACTTGAATTTGAGACACGTCGTGCATCATACTATTGGTTGTTGCATGCGTTAGGCATTTACCAACCTTATGTGTGGGAGTATTCAAGGTTGA
 |||| |     | |  || ||| ||  |    ||    |      |   |  | | | | |||  |   || |||| | | ||   |  ||| | |||||||| ||||||||||||||||| ||||| ||||| |||||||| |||||| |  ||||  | ||| |||||||||||||||| ||||| || ||| ||||||
-cattcttgacaatcaattttgtgaagctccttttgagtttgcatttgaatgaacttgtaatatgacgtcatttatt-caactttcggtgtattttatgcagCTATGTACACTTGAATTTGAAACACGCCGTGCTTCATACTACTGGTTGATAGATGCACTTGGCCTTTACCAACCTTATGTCTGGGAATACTCACGGTTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33389687|gb|CA852894.1|CA852894
EST:     ATGATTATGCACACTGCATTGNGGATTCTCTAGAGAATATCACACATTCA                         CCGTGTACACTTGAATTTGAGACACGTCGTGCATCATACTATTGGTTGTTG
genomic: ATGATTATGCACACTGCATTGTGGATTCTCTAGAGAATATCACACATTCAgtaagttgtc ... tctcatgcagCTGTGTACACTTGAATTTGAGACACGTCGTGCATCATACTATTGGTTGTTG
EST: gi|151409608|gb|EV279416.1|EV279416
EST:     ATGATTATGCACACTGCATTGTGGATTCTCTAGAGAATATCACACATTCA                         CTGTGTACACTTGAATTTGAGACACGTCGTGCATCATACTATTGGTTGTTG
genomic: ATGATTATGCACACTGCATTGTGGATTCTCTAGAGAATATCACACATTCAgtaagttgtc ... tctcatgcagCTGTGTACACTTGAATTTGAGACACGTCGTGCATCATACTATTGGTTGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctgtttattgggattatctatatatattgctaattcatgaatatctcatgcagCTGTGTACACTTGAATTTGAGACACGTCGTGCATCATACTATTGGTTGTTGCATGCGTTAGGCATTTACCAACCTTATGTGTGGGAGTATTCAAGGTTGA
                             tgctaat  putative branch site (score: 2)
              attatctatatatatt  TA-rich tract