Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcaataaattctttttcctggatttgtctttgttttcccagataataacttaaaatttggatgggtcaaaattcagGTATATATACATTCCTCTTGGGGGATCTAAGAAAAAGCTACTAAATGTGTGGGTTGTTTTCACATTTGTTGCAATCTGGCATGATTTAGAGTG

Basic information

species Glycine max
transcript GLYMA20G25100.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G25100.1 (Glycine max), 3'ss of exon 14
lower sequence: AT1G57600.1 (Arabidopsis thaliana), 3'ss of exon 13
-----------gtgcaataaattctt--tttc---ctggatttgtc------tttgttttcccagataataacttaaaatttggatgggtcaaaat------tcagGTATATATACATTCCTCTTGGGGGATCTAAGAAAAAGCTACTAAATGTGTGGGTTGTTTTCACATTTGTTGCAATCTGGCATGATTTAGAGTG
              || |||| |  |  ||||    |  |   |||      |   |||      ||  || ||   ||  | | |  || || ||      | |||||||| || |||||||| || |||||    | |||  | || |||||||||||||| || ||||||||||| || ||||||||||| || ||
gtgagaatgtttaacactaaacttctggtttcaacttaaaagcgtcgcaacatcattttcttttaatgttagctcgtaaaatag-taagttaacatcttcctttagGTATATGTATATTCCTCTAGGTGGATCACGAAGAAAATTTCTGAATGTGTGGGTTGTATTTACATTTGTTGCCATGTGGCATGATTTGGAATG

upper sequence: GLYMA20G25100.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv00s0581g00010.t01 (Vitis vinifera), 3'ss of exon 4
---------------------------------------------------------------------------gtgca-ataaattctttttcctggatttg--------tctttgttttcccagataataact--taaaatttggatgggtcaaaattcagGTATATATACATTCCTCTTGGGGGATCTAAGAAAAAGCTACTAAATGTGTGGGTTGTTTTCACATTTGTTGCAATCTGGCATGATTTAGAGTG
                                                                           || ||  || |||| | ||   || | ||          | ||  |     | | |||  |  | || | | |     |     || ||||| || ||||||||||||||||| ||| ||| |||||| || ||  | |||||| | ||||||||||||||  | |||||||| ||||||||
gtacgctttctacgttttcacatttagcatatcttgtattcctgtcatttttatttttacaaaatttgtttttaaGTACATGTACATTCCTCTTGGAGGGTCTGAGAGAAAGCTTCTGAATATATGGGTTATAGTTATTTAATTCTTGCAAAATTTGTTTTTAGGTACATGTACATTCCTCTTGGGGGCTCTCAGAGAAAGCTTCTGAACATATGGGTTATATTCACATTTGTTGCTGTATGGCATGACTTAGAGTG

upper sequence: GLYMA20G25100.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv00s0449g00010.t01 (Vitis vinifera), 3'ss of exon 7
---------------------------------------------------------------------------gtgca-ataaattctttttcctggatttg--------tctttgttttcccagataataact--taaaatttggatgggtcaaaattcagGTATATATACATTCCTCTTGGGGGATCTAAGAAAAAGCTACTAAATGTGTGGGTTGTTTTCACATTTGTTGCAATCTGGCATGATTTAGAGTG
                                                                           || ||  || |||| | ||   || | ||          | ||  |     | | |||  |  | || | | |     |     || ||||| || ||||||||||||||||| ||| ||| |||||| || ||  | |||||| | ||||||||||||||  | |||||||| ||||||||
gtacgctttctacgttttcacatttagcatatcttgtattcctgtcatttttatttttacaaaatttgtttttaaGTACATGTACATTCCTCTTGGGGGCTCTGAGAGAAAGCTTCTGAATATATGGGTTATAGTTATTTAATTCTTGCAAAATTTGTTTTTAGGTACATGTACATTCCTCTTGGGGGCTCTCAGAGAAAGCTTCTGAACATATGGGTTATATTCACATTTGTTGCTGTATGGCATGACTTAGAGTG

upper sequence: GLYMA20G25100.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv00s0507g00020.t01 (Vitis vinifera), 3'ss of exon 7
---------------------------------------------------------------------------gtgca-ataaattctttttcctggatttgtctttgttttcccagata-ataacttaaaatttggatgggtc----aaaattc------agGTATATATACATTCCTCTTGGGGGATCTAAGAAAAAGCTACTAAATGTGTGGGTTGTTTTCACATTTGTTGCAATCTGGCATGATTTAGAGTG
                                                                           || ||  || |||| | ||   || | ||         | |   ||| ||   |  | | ||   |   ||    ||||||       ||||| || ||||||||||||||||| ||| ||| |||||| || ||| | |||||| | |||||||||||||| || ||||| || ||||||||
gttagctttctactttttcacttttagcatttcttgtattcctgttatttttatttttacaaaatttgtttttaaGTACATGTACATTCCTCTTGGGGGCTCTGAGAGAAAGCTTCTGAATATATGGGTCTATAGTTATTTCATTCTTACAAAATTTGTTTTTAGGTACATGTACATTCCTCTTGGGGGCTCTCAGAGAAAGCTTCTGAATATATGGGTTATATTCACATTTGTTGCTATATGGCACGACTTAGAGTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208093647|gb|GD892294.1|GD892294
EST:     GAAGGCTTTTGGAAAAACTGGCATGCTTCCTTCAACAAGTGGCTTGTGAG                         GTATATATACATTCCTCTTGGGGGATCTAAGAAAAAGCTACTAAATGTGTG
genomic: GAAGGCTTTTGGAAAAACTGGCATGCTTCCTTCAACAAGTGGCTTGTGAGgtgcaataaa ... caaaattcagGTATATATACATTCCTCTTGGGGGATCTAAGAAAAAGCTACTAAATGTGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttgtctttgttttcccagataataacttaaaatttggatgggtcaaaattcagGTATATATACATTCCTCTTGGGGGATCTAAGAAAAAGCTACTAAATGTGTGGGTTGTTTTCACATTTGTTGCAATCTGGCATGATTTAGAGTG
                     taataac  putative branch site (score: 1)
                    ataataacttaaaatt  TA-rich tract