1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtctctgatcatgttttgttcatcacagttatttttctgtttatcacacagactatctcattcatgttatttttatttttttcagCTCTATGCAAATTATGCTATTGGAAAGGATGTCCAGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTG
species | Glycine max |
transcript | GLYMA20G24070.2 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: CTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAACCAG CTCTATGCAAATTATGCTATTGGAAAGGATGTCCAGGCAATGAAAGCAGTGEST: gi|21256304|gb|BQ453192.1|BQ453192
genomic: CTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAACCAGgtctctgatc ... tttttttcagCTCTATGCAAATTATGCTATTGGAAAGGATGTCCAGGCAATGAAAGCAGTG
EST: CTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAACCAG CTCTATGCAAATTATGCTATTGGAAAGGATGTCCAGGCAATGAAAGCAGTGEST: gi|16279439|gb|BI943437.1|BI943437
genomic: CTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAACCAGgtctctgatc ... tttttttcagCTCTATGCAAATTATGCTATTGGAAAGGATGTCCAGGCAATGAAAGCAGTG
EST: CTATTGGTGAGGGAATGACTAGTATGGATCATTCTGATGTGTCCAACCAG CTCTATGCAAATTATGCTATTGGAEST: gi|16276744|gb|BI942021.1|BI942021
genomic: CTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAACCAGgtctctgatc ... tttttttcagCTCTATGCAAATTATGCTATTGGA
EST: CTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAACCAG CTCTATGCAAATTATGCTATTGGAAAGGATGTCCAGGCAATGAAAGCAGTGEST: gi|37996030|gb|CF807619.1|CF807619
genomic: CTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAACCAGgtctctgatc ... tttttttcagCTCTATGCAAATTATGCTATTGGAAAGGATGTCCAGGCAATGAAAGCAGTG
EST: CTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAACCAG CTCTATGCAAATTATGCTATTGGAAAGGATGTCCAGGCAATGAAAGCAGTGEST: gi|15001046|gb|BI321860.1|BI321860
genomic: CTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAACCAGgtctctgatc ... tttttttcagCTCTATGCAAATTATGCTATTGGAAAGGATGTCCAGGCAATGAAAGCAGTG
EST: CTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAACCAG CTCTATGCAAATTATGCTATTGGAAAGGATGTCCAGGCAATGAAAGCAGTGEST: gi|16278548|gb|BI942962.1|BI942962
genomic: CTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAACCAGgtctctgatc ... tttttttcagCTCTATGCAAATTATGCTATTGGAAAGGATGTCCAGGCAATGAAAGCAGTG
EST: TATTGGTGAAGGAATGACTAGAAGGGATCATTCTGATGTGTCCAAACC-G CTATATGCCAATTATGCTATTTGAAACGATGTCCCGGCAATGAAAGCAGTEST: gi|21601974|gb|BQ612305.1|BQ612305
genomic: TATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAA-CCAGgtctctgatc ... tttttttcagCTCTATGCAAATTATGCTATTGGAAAGGATGTCCAGGCAATGAAAGCAGT
EST: CTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAACCAG CTCTATGCAAATTATGCTATTGGAAAGGATGTCCAGGCAATGAAAGCAGTGEST: gi|19269615|gb|BM885871.1|BM885871
genomic: CTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAACCAGgtctctgatc ... tttttttcagCTCTATGCAAATTATGCTATTGGAAAGGATGTCCAGGCAATGAAAGCAGTG
EST: CTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAACCAG CTCTATGCAAATTATGCTATTGGAAAGGATGTCCAGGCAATGAAAGCAGTG
genomic: CTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAACCAGgtctctgatc ... tttttttcagCTCTATGCAAATTATGCTATTGGAAAGGATGTCCAGGCAATGAAAGCAGTG
atttttctgtttatcacacagactatctcattcatgttatttttatttttttcagCTCTATGCAAATTATGCTATTGGAAAGGATGTCCAGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTG
ttatttttattttttt CT-rich tract
tatctcattcatgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctctgatcatgttttgttcatcacagttatttttctgtttatcacacagactatctcattcatgttatttttatttttttcagCTCTATGCAAATTATGCTATTGGAAAGGATGTCCAGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC