1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...aacaaaaaagtattactcaacaaggaacaacagtagttgtgtgaatgatgtgttctaaaataagcttgacaatttaaagtgagtttacttcatatgacagGTTATCGATGCTGAAGATCTTAATTCAGGATGTTACACAATTGATGATGTAATCCTTCCTATGCCAGG
species | Glycine max |
transcript | GLYMA19G43270.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: AGAGATTCATGAAGAAATAAATAGCGTCAAG NNNNTCGATGCTGAAGATCTTAATTCAGGATGTTACACAATTGATGATGTAEST: gi|9564049|gb|BE473558.1|BE473558
genomic: AGAGATTCATGAAGAAATAAATAGCGTCAAGgttagtcttt ... catatgacagGTTATCGATGCTGAAGATCTTAATTCAGGATGTTACACAATTGATGATGTA
EST: ATGAAGATGAAGTCTCTGGAGAGATTCATGAAGAAATAAATAGCGTCAAG GTTATCGATGCTGAAGATCTTAATTCAGGATGTTACACAATTGATGATGTA
genomic: ATGAAGATGAAGTCTCTGGAGAGATTCATGAAGAAATAAATAGCGTCAAGgttagtcttt ... catatgacagGTTATCGATGCTGAAGATCTTAATTCAGGATGTTACACAATTGATGATGTA
tgatgtgttctaaaataagcttgacaatttaaagtgagtttacttcatatgacagGTTATCGATGCTGAAGATCTTAATTCAGGATGTTACACAATTGATGATGTAATCCTTCCTATGCCAGG
tttacttc CT-rich tract
ttctaaaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacaaaaaagtattactcaacaaggaacaacagtagttgtgtgaatgatgtgttctaaaataagcttgacaatttaaagtgagtttacttcatatgacagGTTATCGATGCTGAAGATCTTAATTCAGGATGTTACACAATTGATGATGTAATCCTTCCTATGCCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
aacaaaa
- - - - - - - -ctcaaca
- - - - - - - - - - - - -aacaaca
- - - - - - - - - - - - - - - - - - -tgtgtga
- - - - - - - - - - - - - - - - - - - - - - - - tgtgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttgac