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...attttttagaattgatgattaaaagtatgttggtcattgctgaagttatatctttgccaacttccttatttgtgtatgttattattatcttatttcctagGAGTATGCTTTCTCACCTCCAGCACAGGCAATAGAGCTTGGAGCAGGGGAGTTCAAAGAAGTAGTTTTCCGGGCCACACGTGTAGCCTACAG
species | Glycine max |
transcript | GLYMA19G40520.2 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TGTTTGACAATTTGTTTCCTGGAATGTTTTATTTGCGTCCTGTTTTGAAG GAGTATGCTTTCTCACCTCCAGCACATGCAATAGAGCTTGGAGCAGGGGAGEST: gi|193349055|gb|FK317389.1|FK317389
genomic: TGTTTGACAATTTGTTTCCTGGAATGTTTTATTTGCGTCCTGTTTTGAAGgtactatact ... tatttcctagGAGTATGCTTTCTCACCTCCAGCACAGGCAATAGAGCTTGGAGCAGGGGAG
EST: TGTTTGACAACTTGTTTCCTGGAATGCTTTATTTGCGTCCTGTTTTGAAG GAGTATGCTTTCTCACCTCCAGEST: gi|15815183|gb|BI787458.1|BI787458
genomic: TGTTTGACAATTTGTTTCCTGGAATGTTTTATTTGCGTCCTGTTTTGAAGgtactatact ... tatttcctagGAGTATGCTTTCTCACCTCCAG
EST: TGTTTGACAATTTGTTTCCTGGAATGTTTTATTTGCGTCCTGTTTTGAAG GAGTATGCTTTCTCACCTCCAGCACAGGCAATAGAGCTTGGAGCAGGGGAGEST: gi|22931640|gb|BU548779.1|BU548779
genomic: TGTTTGACAATTTGTTTCCTGGAATGTTTTATTTGCGTCCTGTTTTGAAGgtactatact ... tatttcctagGAGTATGCTTTCTCACCTCCAGCACAGGCAATAGAGCTTGGAGCAGGGGAG
EST: TGTTTGACAATTTGTTTCCTGGAATGTTTTATTTGCGTCCTGTTTTGAAG GAGTATGCTTTCTCACCTCCAGCACAGGNNNTAGAGCTTGGAGCAGGGGAG
genomic: TGTTTGACAATTTGTTTCCTGGAATGTTTTATTTGCGTCCTGTTTTGAAGgtactatact ... tatttcctagGAGTATGCTTTCTCACCTCCAGCACAGGCAATAGAGCTTGGAGCAGGGGAG
ttatatctttgccaacttccttatttgtgtatgttattattatcttatttcctagGAGTATGCTTTCTCACCTCCAGCACAGGCAATAGAGCTTGGAGCAGGGGAGTTCAAAGAAGTAGTTTTCCGGGCCACACGTGTAGCCTACAG
ttatcttatttcct CT-rich tract
ttatttgtgtatgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttttagaattgatgattaaaagtatgttggtcattgctgaagttatatctttgccaacttccttatttgtgtatgttattattatcttatttcctagGAGTATGCTTTCTCACCTCCAGCACAGGCAATAGAGCTTGGAGCAGGGGAGTTCAAAGAAGTAGTTTTCCGGGCCACACGTGTAGCCTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - tgatgat
- - - - - - - - - - - - - atgttgg
- - - - - - - - - - - - - - - - - - -tgctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - -ctttgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtatgt