Sequence
atgc intronic sequence ATGC exonic sequencegtatgtatgctattttctattatatttgacagtagaaagtgttagttttaagagacataaattttcattgactggtgaggaatatttgatttgttttgttttagGTGAAGGATTATATTGCAACCCCTAAACCAAATGGCTACCAGAGTCTTCAGACCACCGTGATTCCATTTTTGTATGAGAGCATGTTTAGGCTAGAAGTCC
Basic information
species | Glycine max |
transcript | GLYMA19G40050.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G40050.1 (Glycine max), 3'ss of exon 14
lower sequence: LOC_Os03g22160.1 (Oryza sativa), 3'ss of exon 14
gtatgtatgctattttctattatatttgacagtagaaagtgttagttttaagagacataaattttcattgactggtgaggaatatttgatttgttttgttttagGTGAAGGATTATATTGCAACCCCTAAACCAAATGGCTACCAGAGTCTTCAGACCACCGTGATTCCATTTTTGTATGAGAGCATGTTTAGGCTAGAAGTCC
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----gtgagttatctgctttccttattcattataatttttacctcttttga-----------ttttgcc-atttctaaaagccagctg-----------tatagGTGAAAGATTACATTGCAACCCCAAAGCCTAATGGATACCAAAGTCTACACACGACAGTGATACCATTTCTGAATGAGAGTATGTTCCATTTGGAAGTTC
upper sequence: GLYMA19G40050.1 (Glycine max), 3'ss of exon 14
lower sequence: AT4G02260.3 (Arabidopsis thaliana), 3'ss of exon 14
gtatgtatgctattttctattatatttgacagtagaaagtgttagttttaagagacataaattttcattgactggtgaggaatatttgatttgttttgttttagGTGAAGGATTATATTGCAACCCCTAAACCAAATGGCTACCAGAGTCTTCAGACCACCGTGATTCCATTTTTGTATGAGAGCATGTTTAGGCTAGAAGTCC
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---------------------gtatgtatcag-----atcttttgttattcaggttatatcttatc-tacattgggactgaacatatgtcttac--------agGTAAAAGATTACATTGCAACCCCGAAGCCCAATGGATACCAGAGCCTCCATACTACTGTGATTCCATTCTTGTATGAGAGTATGTTTCGACTGGAGGTTC
upper sequence: GLYMA19G40050.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv07s0005g00770.t01 (Vitis vinifera), 3'ss of exon 14
gtatgtatgctattttctattatatttgacagtagaaagtgttagttttaagagacataaattttcattgactggtgaggaatatttgatttgttttgttttagGTGAAGGATTATATTGCAACCCCTAAACCAAATGGCTACCAGAGTCTTCAGACCACCGTGATTCCATTTTTGTATGAGAGCATGTTTAGGCTAGAAGTCC
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gtgtgtactttgctttgcacatcctttgaaatttgcttctaatttaagtatcagacaaaatgactagtttttctagaaataatattttattt-ttttgcaacagATGAAAGACTATATTGCAACTCCAAAACCTAATGGCTATCAAAGTCTCCATACAACTGTAATTCCATTTCTTTATGAGAGCATGTTTCGACTGGAAGTTCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|10846905|gb|BF069752.1|BF069752EST: ATCATGTTCTGGGGTTGATCCATGGAATCTGGACCCCTATTCCTAGATCT GTGAAGGATTATATTGCAACCCCTAAACCAAATGGCTACCAGAGTCTTCAG
genomic: ATCATGTTCTGGGGTTGATCCATGGAATCTGGACCCCTATTCCTAGATCTgtatgtatgc ... tttgttttagGTGAAGGATTATATTGCAACCCCTAAACCAAATGGCTACCAGAGTCTTCAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aagagacataaattttcattgactggtgaggaatatttgatttgttttgttttagGTGAAGGATTATATTGCAACCCCTAAACCAAATGGCTACCAGAGTCTTCAGACCACCGTGATTCCATTTTTGTATGAGAGCATGTTTAGGCTAGAAGTCC
ttttgtttt CT-rich tract
aatatttgatttgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtatgctattttctattatatttgacagtagaaagtgttagttttaagagacataaattttcattgactggtgaggaatatttgatttgttttgttttagGTGAAGGATTATATTGCAACCCCTAAACCAAATGGCTACCAGAGTCTTCAGACCACCGTGATTCCATTTTTGTATGAGAGCATGTTTAGGCTAGAAGTCC
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