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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atatatatatatttatttttgctgataaaaaaaaaactaatgtgttagatgcagggcattttgtattacttagtcttcacaagtctgtaatgttttgtagGTTGTGGCAGCTGTTGGCTTTAAGGGAAAAAGACTTGAGATACCACGTGATTTAAATCCTCAATTAGCCTCTATAATTGAGTCTTGTTGGGCCAA

Basic information

species Glycine max
transcript GLYMA19G37570.2
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G37570.2 (Glycine max), 3'ss of exon 14
lower sequence: Vv08s0007g03910.t01 (Vitis vinifera), 3'ss of exon 13
atatatatatatttatttttgctgataaaaaaaaaactaatgtgttagatgcagggcattttgtattacttagtcttca--caagtctgtaatgttttgtagGTTGTGGCAGCTGTTGGCTTTAAGGGAAAAAGACTTGAGATACCACGTGATTTAAATCCTCAATTAGCCTCTATAATTGAGTCTTGTTGGGCCAA
   |  |   | | |  | ||||| ||  ||  |  ||  | |    || |   |  | |   |   |   |   |       | | |  | ||| ||||||||||| ||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||||| | || || ||||||||  | |||||||| ||
--gttcagggaatgaagtctgctggtagtaagcaggctggtttagctgaggagtgttaatcatttaaatacaacttgtggctcaatgttcattgtcttgtagGTTGTAGCAGCTGTTGGTTTTAAGGGCAAAAGGCTTGAGATCCCACGTGATTTAAATCCTCAAGTGGCTTCCATAATTGAAGCATGTTGGGCAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8285414|gb|BE022973.1|BE022973
EST:     GGGAGATCGCAACATTGCAACAGCCTTGGAGTAATTTGAATCCACCACAG                         GTTGTGGCAGCTGTTGGCTTTAAGGGAAAAAGACTTGAGATACCACGTGAT
genomic: GGGAGATCGCAACATTGCAACAGCCTTGGAGTAATTTGAATCCACCACAGgtttgttgta ... tgttttgtagGTTGTGGCAGCTGTTGGCTTTAAGGGAAAAAGACTTGAGATACCACGTGAT
EST: gi|208336673|gb|GE135105.1|GE135105
EST:     GGGAGATCGCAACATTGCAACAGCCTTGGAGTAATTTGAATCCACCACAG                         GTTGTGGCAGCTGTTGGCTTTAAGGGAAAAAGACTTGAGATACCACGTGAT
genomic: GGGAGATCGCAACATTGCAACAGCCTTGGAGTAATTTGAATCCACCACAGgtttgttgta ... tgttttgtagGTTGTGGCAGCTGTTGGCTTTAAGGGAAAAAGACTTGAGATACCACGTGAT
EST: gi|208074644|gb|GD868281.1|GD868281
EST:     GGGAGATCGCAACATTGCAACAGCCTTGGAGTAATTTGAATCCACCACAG                         GTTGTGGCAGCTGTTGGCTTTAAGGGAAAAAGACTTGAGATACCACGTGAT
genomic: GGGAGATCGCAACATTGCAACAGCCTTGGAGTAATTTGAATCCACCACAGgtttgttgta ... tgttttgtagGTTGTGGCAGCTGTTGGCTTTAAGGGAAAAAGACTTGAGATACCACGTGAT
EST: gi|207781788|gb|GD751791.1|GD751791
EST:     GGGAGATCGCAACATTGCAACAGCCTTGGAGTAATTTGAATCCACCACAG                         GTTGTGGCAGCTGTTGGCTTTAAAGGGAAAAAGACTTGAGATACCACGTGA
genomic: GGGAGATCGCAACATTGCAACAGCCTTGGAGTAATTTGAATCCACCACAGgtttgttgta ... tgttttgtagGTTGTGGCAGCTGTTGGCTTTAA-GGGAAAAAGACTTGAGATACCACGTGA
EST: gi|208260829|gb|GE059837.1|GE059837
EST:     GGGAGATCGCAACATTGCAACAGCCTTGGAGTAATTTGAATCCACCACAG                         GTTGTGGCAGCTGTTGGCTTTAAGGGAAAAAGACTTGAGATACCACGTGAT
genomic: GGGAGATCGCAACATTGCAACAGCCTTGGAGTAATTTGAATCCACCACAGgtttgttgta ... tgttttgtagGTTGTGGCAGCTGTTGGCTTTAAGGGAAAAAGACTTGAGATACCACGTGAT
EST: gi|208280179|gb|GE075477.1|GE075477
EST:     GGGAGATCGCAACATTGCAACAGCCTTGGAGTAATTTGAATCCACCACAG                         GTTGTGGCAGCTGTTG
genomic: GGGAGATCGCAACATTGCAACAGCCTTGGAGTAATTTGAATCCACCACAGgtttgttgta ... tgttttgtagGTTGTGGCAGCTGTTG
EST: gi|208104845|gb|GD907342.1|GD907342
EST:     GGGAGATCGCAACATTGCAACAGCCTTGGAGTAATTTGAATCCACCACAG                         GTTGTGGCAGCTGTTGGCTTTAAGGGAAAA-GACTTGAGATACCACGTGAT
genomic: GGGAGATCGCAACATTGCAACAGCCTTGGAGTAATTTGAATCCACCACAGgtttgttgta ... tgttttgtagGTTGTGGCAGCTGTTGGCTTTAAGGGAAAAAGACTTGAGATACCACGTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagatgcagggcattttgtattacttagtcttcacaagtctgtaatgttttgtagGTTGTGGCAGCTGTTGGCTTTAAGGGAAAAAGACTTGAGATACCACGTGATTTAAATCCTCAATTAGCCTCTATAATTGAGTCTTGTTGGGCCAA
            attttgtattactta  TA-rich tract