1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...ttaaagctcaactcttgggaggtacatactgtgatagaaaaattatccttcttttcacgcgcatgaggttttaaatgtatcttatgttattcccatgcagCTGTCTCTGCTGATGATCTGCACAAACGCAACACCATATTATCCAATGCTGAGCCCATGCAACCGATGGTGGTGGAACTTCACTCGCATTAGCAAAAATG
species | Glycine max |
transcript | GLYMA19G35370.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TTGGACATGTAATTCAAAGATCTGCTTCACATCACTGTACAACTCATCTG CTGTCTCTGCTGATGATCTGCACAAACGCAACACCATATTATCCAATGCTGEST: gi|22928249|gb|BU545388.1|BU545388
genomic: TTGGACATGTAATTCAAAGATCTGCTTCACATCACTGTACAACTCATCTGgtaagccttc ... tcccatgcagCTGTCTCTGCTGATGATCTGCACAAACGCAACACCATATTATCCAATGCTG
EST: TTGGACATGTAATTCAAAGATCTGCTTCACATCACTGTACAACTCATCTG CTGTCTCTGCTGATGATCTGCACAAACGCAACACCATATTATCCAATGCTGEST: gi|6200910|gb|AW153010.1|AW153010
genomic: TTGGACATGTAATTCAAAGATCTGCTTCACATCACTGTACAACTCATCTGgtaagccttc ... tcccatgcagCTGTCTCTGCTGATGATCTGCACAAACGCAACACCATATTATCCAATGCTG
EST: ATTCAAAGATCTGCTTCACATCACTGTACAACTCATCTG CTGTCTCTGCTGATGATCTGCACAAACGCAAEST: gi|15203207|gb|BI425975.1|BI425975
genomic: ATTCAAAGATCTGCTTCACATCACTGTACAACTCATCTGgtaagccttc ... tcccatgcagCTGTCTCTGCTGATGATCTGCACAAACGCAA
EST: TTGGACATGTAATTCAAAGATCTGCTTCACATCACTGTACAACTCATCTG CTGTCTCTGCTGATGATCTGCACEST: gi|21676372|gb|BQ628723.1|BQ628723
genomic: TTGGACATGTAATTCAAAGATCTGCTTCACATCACTGTACAACTCATCTGgtaagccttc ... tcccatgcagCTGTCTCTGCTGATGATCTGCAC
EST: TTGGACATGTAATTCAAAGATCTGCTTCACATCACTGTACAACTCATCTG CTGTCTCTGCTGATGATCTGCACAAACGCAACACCATATTATCCAATGCTGEST: gi|16348103|gb|BI973698.1|BI973698
genomic: TTGGACATGTAATTCAAAGATCTGCTTCACATCACTGTACAACTCATCTGgtaagccttc ... tcccatgcagCTGTCTCTGCTGATGATCTGCACAAACGCAACACCATATTATCCAATGCTG
EST: TTGGACATGTAATTCAAAGATCTGCTTCACATCACTGTACAACTCATCTG CTGTCTCTGCTGATGATCTGCACAAACGCAACACCATATTATCCAATGCTG
genomic: TTGGACATGTAATTCAAAGATCTGCTTCACATCACTGTACAACTCATCTGgtaagccttc ... tcccatgcagCTGTCTCTGCTGATGATCTGCACAAACGCAACACCATATTATCCAATGCTG
tccttcttttcacgcgcatgaggttttaaatgtatcttatgttattcccatgcagCTGTCTCTGCTGATGATCTGCACAAACGCAACACCATATTATCCAATGCTGAGCCCATGCAACCGATGGTGGTGGAACTTCACTCGCATTAGCAAAAATG
ttattccc CT-rich tract
ttttaaatgtatctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaaagctcaactcttgggaggtacatactgtgatagaaaaattatccttcttttcacgcgcatgaggttttaaatgtatcttatgttattcccatgcagCTGTCTCTGCTGATGATCTGCACAAACGCAACACCATATTATCCAATGCTGAGCCCATGCAACCGATGGTGGTGGAACTTCACTCGCATTAGCAAAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - caactct
- - - - - - - - gggaggt
- - - - - - - - - - - - catactg
- - - - - - - - - - - - - - - - - -agaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgag