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gtaattttcttatagttttgctgtgaaaacttctaccctttatcatattcttgtaacatagaataagcactttgaaaatttagtgtgataaattatttttagatttcaacatgatgcccataataacacgaggttgtgtaaatgtgtcattacagATGGATTCCCGATGCAATTGTGTTCGACTCTTATCAGGTTTATGGAACTCCTAGCTATTGGGTGCAGAAACTTTTTATTGAATCCAGTGGAGCAACATTT
species | Glycine max |
transcript | GLYMA19G30460.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GTGGAGATGGTTTCTTATGCACCACTTTTCTTAAATATAAATGACAAGAG ATGGATTCCCGATGCAATTGTGTTCGACTCTTATCAGGTTTATGGAACTCCEST: gi|193452263|gb|FK418529.1|FK418529
genomic: GTGGAGATGGTTTCTTATGCACCACTTTTCTTAAATATAAATGACAAGAGgtaattttct ... gtcattacagATGGATTCCCGATGCAATTGTGTTCGACTCTTATCAGGTTTATGGAACTCC
EST: GTGGAGATGGTTTCTTATGCACCACTTTTCTTAAATATAAATGACAAGAG ATGGATTCCCGATGCAATTGTGTTCGACTCTTATCAGGTTTATGGAACTCCEST: gi|193354959|gb|FK322568.1|FK322568
genomic: GTGGAGATGGTTTCTTATGCACCACTTTTCTTAAATATAAATGACAAGAGgtaattttct ... gtcattacagATGGATTCCCGATGCAATTGTGTTCGACTCTTATCAGGTTTATGGAACTCC
EST: GTGGAGATGGTTTCTTATGCACCACTTTTCTTAAATATAAATGACAAGAG ATGGATTCCCGATGCAATTGTGTTCGACTCTTATCAGGTTTEST: gi|193511194|gb|FK468463.1|FK468463
genomic: GTGGAGATGGTTTCTTATGCACCACTTTTCTTAAATATAAATGACAAGAGgtaattttct ... gtcattacagATGGATTCCCGATGCAATTGTGTTCGACTCTTATCAGGTTT
EST: GTGGAGATGGTTTCTTATGCACCACTTTTCTTAAATATAAATGACAAGAG ATGGATTCCCGATGCAATTGTGTTCGACTCTTATCAGGTTTATGGAACTCCEST: gi|193303429|gb|FK272049.1|FK272049
genomic: GTGGAGATGGTTTCTTATGCACCACTTTTCTTAAATATAAATGACAAGAGgtaattttct ... gtcattacagATGGATTCCCGATGCAATTGTGTTCGACTCTTATCAGGTTTATGGAACTCC
EST: CCACTTTTCTTAAATATAAATGACAAGAG ATGGATTCCCGATGCAATTGTGTTCGACTCTTATCAGGTTTATGGAACTCCEST: gi|193651300|gb|FK597677.1|FK597677
genomic: CCACTTTTCTTAAATATAAATGACAAGAGgtaattttct ... gtcattacagATGGATTCCCGATGCAATTGTGTTCGACTCTTATCAGGTTTATGGAACTCC
EST: GTGGAGATGGTTTCTTATGCACCACTTTTCTTAAATATAAATGACAAGAG ATGGATTCCCGATGCAATTGTGTTCGACTCTTATCAGGTTTATGGAACTCCEST: gi|208112736|gb|GD909731.1|GD909731
genomic: GTGGAGATGGTTTCTTATGCACCACTTTTCTTAAATATAAATGACAAGAGgtaattttct ... gtcattacagATGGATTCCCGATGCAATTGTGTTCGACTCTTATCAGGTTTATGGAACTCC
EST: GTGGAGATGGTTTCTTATGCACCACTTTTCTTAAATATAAATGACAAGAG ATGGATTCCCGATGCAATTGTGEST: gi|208288352|gb|GE084365.1|GE084365
genomic: GTGGAGATGGTTTCTTATGCACCACTTTTCTTAAATATAAATGACAAGAGgtaattttct ... gtcattacagATGGATTCCCGATGCAATTGTG
EST: GTGGAGATGGTTTCTTATGCACCACTTTTCTTAAATATAAATGACAAGAG ATGGATTCCCGATGCAATTGTGTTCGACTCTTATCAGGTTEST: gi|193557764|gb|FK515731.1|FK515731
genomic: GTGGAGATGGTTTCTTATGCACCACTTTTCTTAAATATAAATGACAAGAGgtaattttct ... gtcattacagATGGATTCCCGATGCAATTGTGTTCGACTCTTATCAGGTT
EST: GTGGAGATGGTTTCTTATGCACCACTTTTCTTAAATATAAATGACAAGAG ATGGGATTCCCGATGCAATTGTGTTCGACTCTTATCAGGTTTATGGAACTCEST: gi|58020822|gb|CX707564.1|CX707564
genomic: GTGGAGATGGTTTCTTATGCACCACTTTTCTTAAATATAAATGACAAGAGgtaattttct ... gtcattacagATGG-ATTCCCGATGCAATTGTGTTCGACTCTTATCAGGTTTATGGAACTC
EST: TATAAATGACAAGAG ATGGATCCCCGATGCAATTGTGTTCGACTCTTATCAGGTTTATGGAACTCCEST: gi|6724799|gb|AW309198.1|AW309198
genomic: TATAAATGACAAGAGgtaattttct ... gtcattacagATGGATTCCCGATGCAATTGTGTTCGACTCTTATCAGGTTTATGGAACTCC
EST: GTGGAGATGGTTTCTTATGCACCACTTTTCTTAAATATAAATGACAAGAG ATGGATTCCCGATGCAATTGTGTTCGACTCTTATCAGGTTTATGGAACTCC
genomic: GTGGAGATGGTTTCTTATGCACCACTTTTCTTAAATATAAATGACAAGAGgtaattttct ... gtcattacagATGGATTCCCGATGCAATTGTGTTCGACTCTTATCAGGTTTATGGAACTCC
agatttcaacatgatgcccataataacacgaggttgtgtaaatgtgtcattacagATGGATTCCCGATGCAATTGTGTTCGACTCTTATCAGGTTTATGGAACTCCTAGCTATTGGGTGCAGAAACTTTTTATTGAATCCAGTGGAGCAACATTT
taataac putative branch site (score: 1)
ataataaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattttcttatagttttgctgtgaaaacttctaccctttatcatattcttgtaacatagaataagcactttgaaaatttagtgtgataaattatttttagatttcaacatgatgcccataataacacgaggttgtgtaaatgtgtcattacagATGGATTCCCGATGCAATTGTGTTCGACTCTTATCAGGTTTATGGAACTCCTAGCTATTGGGTGCAGAAACTTTTTATTGAATCCAGTGGAGCAACATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA