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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggcatattattcttctgcttttcttctgaaggcatggattttaattgacttttggtgttaaaaatgtgttagatccatatatatgaccttttgtaataacttctcattgctgcagCGAATGATGACCGAGAACCCAGAGAAATATCAACACATGCTTCAGAATCTTGTTGTTAAGGCTCAGCAG

Basic information

species Glycine max
transcript GLYMA18G52540.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G52540.1 (Glycine max), 3'ss of exon 14
lower sequence: AT3G12590.1 (Arabidopsis thaliana), 3'ss of exon 15
gtggcatattattcttctgcttttcttctgaaggcatggattttaattgacttttggtgttaaaaatgtgttagatccatatatatgaccttttgtaataacttctcattgctgcagCGAATGATGACCGAGAACCCAGAGAAATATCAACACATGCTTCAGAATCTTGTTGTTAAGGCTCAGCAG
  |  | |  ||| |||   ||  |   |       ||||     ||    ||       ||| ||  |   | ||     | | || |     |    || ||   |||  | ||| | |||||||| ||| | ||||||||||| ||| ||||||||||||| |||||  ||||||||||||||
--gcaagaggatttttcaaattcaccattttgattttggaaagacatca--ttgaaagaataataagtttccaaatat---tttttggctcaccggttaaaatttggattatttcagAGGATGATGACGGAGGAACCAGAGAAATACCAAAACATGCTTCAGAAGCTTGTCTTTAAGGCTCAGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaatgtgttagatccatatatatgaccttttgtaataacttctcattgctgcagCGAATGATGACCGAGAACCCAGAGAAATATCAACACATGCTTCAGAATCTTGTTGTTAAGGCTCAGCAG
                                 taataac  putative branch site (score: 1)
                                       cttctcatt  CT-rich tract
                            ttttgtaataactt  TA-rich tract