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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgcattactcattgtactgacatgcgtgtgtgtttggatagaaaattggttaagccgacagtgatgacatcagtataaggtgtcacttatatgattatgactaagacaatttgaacagGTAATTGCTTCTGAAAATCAACCAGTGCGCTGGACCACTCCTCTTGGACTTCCTGTGGTGCAACCTTACCGTAAACTAGGAAAGCATATT

Basic information

species Glycine max
transcript GLYMA18G51160.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G51160.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv14s0083g00790.t01 (Vitis vinifera), 3'ss of exon 12
gtatgttgcattactcattgtactgacatgcgtgtgtgtttggatagaaaattggttaagccgacagtgatgacatcagtataaggtgtcacttatatgattatgactaagacaatttgaacagGTAATTGCTT---CTGAAAATCA----ACCAGTGCGCTGGACCACTCCTCTTGGACTTCCTGTGGTGCAACCTTACCGTAAACTAGGAAAGCATATT
      ||| | |   | | ||   |  |  |    |  ||   || || ||     |    | |  || | | |  |||    ||| || ||  ||   || ||||  |  | |  || | ||  ||||| |    | || | | |    | |||||    |   |||   | ||||   | ||  ||  ||     |  | | | |     | |  |  
------tgcgtcagaaaatatatgtatgt-tgcacataatt---tacaagatgtaccattttgtc--tggttatagaagt----ggtttccctgctaaagttttgaccgactctagGTGGATAGAAAATTGGTGAAGCAGACAGTAATGACATCAGTGTATGGTGTCACCTATATTGG---TGCTCGGGATCAGATAAAGAGGAGATTGAAGGAACGCA--

upper sequence: GLYMA18G51160.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv14s0083g00790.t01 (Vitis vinifera), 3'ss of exon 14
gtatgttgcattactcattgtactgacatgcgtgtgtgtttggatagaaaattggttaagccgacagtgatgacatcagtataaggtgtcacttatatgattatgactaagac--aatttgaacagGTAATTGCTTCTGAAAATCAACCAGTGCGCTGGACCACTCCTCTTGGACTTCCTGTGGTGCAACCTTACCGTAAACTAGGAAAGCATATT
                            |   | | | | |   |       |   |    | |      |||  |  |||||   |     ||   | || |      ||    ||  ||||||| ||||||| || |||||||| || ||| | ||||| || || |||||||||||||| |||||||||||||| ||| |||| | |||| | 
--------------------------tctctctctctctctctctctctctctctctctctccatgtgtgtgaattatgtatataattgttgttgactaatgactgtagagtttgaacatgaacagATAATTGCATCGGAAAATCAGCCTGTGAGATGGACTACACCACTTGGACTTCCTGTAGTGCAACCTTACCGCAAATTAGGGAGGCATTTG

upper sequence: GLYMA18G51160.1 (Glycine max), 3'ss of exon 14
lower sequence: PP1S256_41V6.1 (Physcomitrella patens), 3'ss of exon 15
gtatgttgcattactcattgtactgacatgcgtgtgtgtttggatagaaaattggttaagccgacagtgatgacatcagtataaggtgtcacttatatgattatgactaagacaatttgaacagGTAATTGCTTCTGAAAATCAACCAGTGCGCTGGACCACTCCTCTTGGACTTCCTGTGGTGCAACCTTACCGTAAACTAGGAAAGCATATT
             || |  ||||| |  | |  |||  |||   |   | |||       |   |||   | |  ||||| ||| |    | ||   ||| |  || |       ||||| ||| | ||||| ||  |     || | |||   ||||| ||||||||||||||||| || |||||||||||||| || |  || |  ||| | 
-----------agcttaacgtact-attttcaagtg-atttcactgctagatt------tctctcagatttcat-tcagtctaaag---gaattgagtgaat-cgattggatgtttttgagcagATCATTGCCTCAAATGGAGAAACTGTGAAGTGGACTACTCCTCTTGGACTTCCCGTTGTGCAACCTTACCGCAAGCCTGGCAGACATTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgacatcagtataaggtgtcacttatatgattatgactaagacaatttgaacagGTAATTGCTTCTGAAAATCAACCAGTGCGCTGGACCACTCCTCTTGGACTTCCTGTGGTGCAACCTTACCGTAAACTAGGAAAGCATATT
                     acttatatgattat  TA-rich tract