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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

tgaggaatttttatgtttttggtagttgatttgacttgttttgtttaaggaaataggtgatgcttggataaggggtatgtggactagaaattccagatgaaagtggttgtattgagaaatcacgttgtttatggaattgtgtagcATCAATGTGAAGGCTAAAATCACTGAATGGGGAGTGAACTGGCTTCACGTCTGCTACTGCTGTCTTAGACAGGCTTCTTAAATTCCTGCTTATAAGG

Basic information

species Glycine max
transcript GLYMA18G42790.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10231355|gb|BE800243.1|BE800243
EST:     CAGTGAACTGCAACCAGAAGATGGAGTGCCTAGAGAAAATGCTTCTGAGC                         ATCAATGTGAAGGCTAAAATCACTGAATGGGGAGTGAACTGGCTTCACGTC
genomic: CAGTGAACTGCAACCAGAAGATGGAGTGCCTAGAGAAAATGCTTCTGAGGtgaggaattt ... attgtgtagcATCAATGTGAAGGCTAAAATCACTGAATGGGGAGTGAACTGGCTTCACGTC
EST: gi|31306745|gb|CD391948.1|CD391948
EST:     AACTGCAACCAGAAGATGGAGTGCCTAGAGAAAATGCTTCTGAGC                         ATCAATGTGAAGGCTAAAATCACTGAATGGGGAGTGAACTGGCTTCACGTC
genomic: AACTGCAACCAGAAGATGGAGTGCCTAGAGAAAATGCTTCTGAGGtgaggaattt ... attgtgtagcATCAATGTGAAGGCTAAAATCACTGAATGGGGAGTGAACTGGCTTCACGTC
EST: gi|21994254|gb|BQ785782.1|BQ785782
EST:     AGAGAAAATGCTTCTGAGC                         ATCAATGTGAAGGCTAAAATCACTGAATGGGGAGTGAACTGGCTTCACGTC
genomic: AGAGAAAATGCTTCTGAGGtgaggaattt ... attgtgtagcATCAATGTGAAGGCTAAAATCACTGAATGGGGAGTGAACTGGCTTCACGTC
EST: gi|8284717|gb|BE022259.1|BE022259
EST:     CAGTGAACTGCAACCAGAAGATGGAGTGCCTAGAGAAAATGCTTCTGAGC                         ATCAATGTGAAGGCTAAAATCACTGAATGGGGAGTGAACTGGCTTCACGTC
genomic: CAGTGAACTGCAACCAGAAGATGGAGTGCCTAGAGAAAATGCTTCTGAGGtgaggaattt ... attgtgtagcATCAATGTGAAGGCTAAAATCACTGAATGGGGAGTGAACTGGCTTCACGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccagatgaaagtggttgtattgagaaatcacgttgtttatggaattgtgtagcATCAATGTGAAGGCTAAAATCACTGAATGGGGAGTGAACTGGCTTCACGTCTGCTACTGCTGTCTTAGACAGGCTTCTTAAATTCCTGCTTATAAGG
                                  ttgtttat  TA-rich tract