1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
taagtgactattgtcttggttcctctatatttcttgctctttttcctttgcaatgtgattaattctctcttgcttctttctttttattatgttgtttatgattttcatttgatttttgcaccttttcaggCACCTAAAGGTGTGCATGTGGTATGCAAAAGTTTTCCAAGAATAAAGATAGTAACATCTGAGATTGAGATTGGTTTGAATGAAGATTTCCGTGTCATACC
species | Glycine max |
transcript | GLYMA18G08180.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: AAAAAAGGGTGTACCTGAGTCCAACATTATATTTCTTAATCTCATATCTG CACCTAAAGGTGTGCATGTGGTATGCAAAAGTTTTCCAAGAATAAAGATAGEST: gi|6951844|gb|AW423912.1|AW423912
genomic: AAAAAAGGGTGTACCTGAGTCCAACATTATATTTCTTAATCTCATATCTGtaagtgacta ... ccttttcaggCACCTAAAGGTGTGCATGTGGTATGCAAAAGTTTTCCAAGAATAAAGATAG
EST: AAAAAAGGGTGTACCTGAGTCCAACATTATATTTCTTAATCTCATATCTG CACCTAAAGGTGTGCATGTGGTATGCAAAAGTTTTCCAAGAATAAAGATAGEST: gi|58019197|gb|CX705939.1|CX705939
genomic: AAAAAAGGGTGTACCTGAGTCCAACATTATATTTCTTAATCTCATATCTGtaagtgacta ... ccttttcaggCACCTAAAGGTGTGCATGTGGTATGCAAAAGTTTTCCAAGAATAAAGATAG
EST: AAAAAAGTGTGTACCTGAGTCCAACATTATATTTCTTAATCTCATATCTG CACCTAAAGGTGTGCATGTGGTATGCAAAAGTTTTCCAAGAATAAAGATAGEST: gi|15286158|gb|BI470049.1|BI470049
genomic: AAAAAAGGGTGTACCTGAGTCCAACATTATATTTCTTAATCTCATATCTGtaagtgacta ... ccttttcaggCACCTAAAGGTGTGCATGTGGTATGCAAAAGTTTTCCAAGAATAAAGATAG
EST: AAAAAAGGGTGTACCTGAGTCCAACATTATATTTCTTAATCTCATATCTG CACCTAAAGGTGTGCATGTGGTATGCAAAAGTTTTCCAAGAATAAAGATAGEST: gi|58018989|gb|CX705731.1|CX705731
genomic: AAAAAAGGGTGTACCTGAGTCCAACATTATATTTCTTAATCTCATATCTGtaagtgacta ... ccttttcaggCACCTAAAGGTGTGCATGTGGTATGCAAAAGTTTTCCAAGAATAAAGATAG
EST: AAAAAAGTGTGTACCTGAGTCCAACATTATATTTCTTAATCTCATATCTG CACCTAAAGGTGTGCATGTGGTATGCAAAAGTTTTCCAAGAATAAAGATAGEST: gi|9984937|gb|BE659045.1|BE659045
genomic: AAAAAAGGGTGTACCTGAGTCCAACATTATATTTCTTAATCTCATATCTGtaagtgacta ... ccttttcaggCACCTAAAGGTGTGCATGTGGTATGCAAAAGTTTTCCAAGAATAAAGATAG
EST: AAAAAAGGGTGTACCTGAGTCCAACATTATATTTCTTAATCTCATATCTG CACCTAAAGGTGTGCATGTGGTATGCAAAAGTTTTCCAAGAATAAAGATAG
genomic: AAAAAAGGGTGTACCTGAGTCCAACATTATATTTCTTAATCTCATATCTGtaagtgacta ... ccttttcaggCACCTAAAGGTGTGCATGTGGTATGCAAAAGTTTTCCAAGAATAAAGATAG
ctttctttttattatgttgtttatgattttcatttgatttttgcaccttttcaggCACCTAAAGGTGTGCATGTGGTATGCAAAAGTTTTCCAAGAATAAAGATAGTAACATCTGAGATTGAGATTGGTTTGAATGAAGATTTCCGTGTCATACC
atttgat putative branch site (score: 5)
tttttgcaccttttc CT-rich tract
tttttattatgttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taagtgactattgtcttggttcctctatatttcttgctctttttcctttgcaatgtgattaattctctcttgcttctttctttttattatgttgtttatgattttcatttgatttttgcaccttttcaggCACCTAAAGGTGTGCATGTGGTATGCAAAAGTTTTCCAAGAATAAAGATAGTAACATCTGAGATTGAGATTGGTTTGAATGAAGATTTCCGTGTCATACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA