Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgagagaatcctctgtagttcatattaactatttctttgtatttctcccattgtctgccacactgttggataattgattatcaaattatatattttctgacatggaaattctataactatttcatctcaatttgcagaaattaatagttgtaaaaactaattcaacaactttcttttttcattttggtttctagGGTGCTGTTAATTTTGCATTAATGATGTCGCAAATGGAGGGAGGTTGCCCAGTTGATTACAACACCATAACTGATCTGTTTCTTCAG

Basic information

species Glycine max
transcript GLYMA18G02960.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G02960.1 (Glycine max), 3'ss of exon 14
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 3'ss of exon 14
gtatgagagaatcctctgtagttcatattaactatttctttgtatttctcccattgtctgccacactgttggataattgatta-tcaaattatatattttctgacatggaaattctataactatttcatctcaatttgcagaaattaatagttgtaaaaactaattcaacaactttcttttttcattttggtttctagGGTGCTGTTAATTTTGCATTAATGATGTCGCAAATGGAGGGAGGTTGCCCAGTTGATTACAACACCATAACTGATCTGTTTCTTCAG
                                                                         ||||  |||  | ||  ||| | |   ||    || |||| || |   |  |||        |||  ||  || ||  ||| ||||      | ||  | || || | |   | ||  || | |||| ||||| || |||||  | |||||||| ||||||||||| || || |||||||||||||| || ||||||||||| || ||||||
------------------------------------------------------------------------gtaatgtattggttaagctattt-tgggctagggtg-aaatactctgctttgttc--tgtgggttgttgatttttat--ttgcaaaa------ttaattatttactgtatatctctt--ttaccagGGAGCTGTCAACTTTGCGCTCATGATGTCACAAATGGAGGGGGGCTGTCCAGTTGATTACAATACTATAACTGATCTCTTCCTTCAG

upper sequence: GLYMA18G02960.1 (Glycine max), 3'ss of exon 14
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 3'ss of exon 14
gtatgagagaatcctctgtagttcatattaactatttctttgtatttctcccattgtctgccacactgttggataattgattatcaaattatatattttctgacatggaaattctataactatttcatctcaatttgcagaa-attaatagttgtaaaaactaattcaacaactttcttttttcattttggtttctagGGTGCTGTTAATTTTGCATTAATGATGTCGCAAATGGAGGGAGGTTGCCCAGTTGATTACAACACCATAACTGATCTGTTTCTTCAG
                                                                            |   ||||    | |  |||||| ||  | ||  |       | ||||     |   | ||  |    || ||  || ||    | || |  |  | || || | |   | ||  || | |||| ||||| || |||||  | |||||||| ||||||||||| || || |||||||||||||| || ||||||||||| || ||||||
---------------------------------------------------------------------------gtaatttattggttaagctattttgtgctagggtga-------aatattctgctttgttctgtgggttgttgat--ttttatttgcaaaatttattatttactgtatatctctt--ttaccagGGAGCTGTCAACTTTGCGCTCATGATGTCACAAATGGAGGGGGGCTGTCCAGTTGATTACAATACTATAACTGATCTCTTCCTTCAG

upper sequence: GLYMA18G02960.1 (Glycine max), 3'ss of exon 14
lower sequence: GRMZM2G057576_T02 (Zea mays), 3'ss of exon 12
gtatgagagaatcctctgtagttcatattaactatttctttgtatttctcccattgtctgccacactgttggataattgattatcaaattatatattttctgacatggaaattctataactatttcatctcaatttgcagaaattaatagt-tgtaaaaactaattcaacaactttcttttttcattttggtttctagGGTGCTGTTAATTTTGCATTAATGATGTCGCAAATGGAGGGAGGTTGCCCAGTTGATTACAACACCATAACTGATCTGTTTCTTCAG
                                                                         |||||| ||||    |||   |       || |||   |  | | |    ||||| |   || | | |  ||  |  | | | | || |  ||     | | ||  |||  || |||    | |||| ||||| || |||||||| |||||||| ||||||||||||||||| ||||| || |||||||| || |||||||| || ||||||
------------------------------------------------------------------------gtaattggttatt---ttaagca------aacttgggcttaatgtgaggtattcattt-gtttggtacatgtttcttttatctcagaaatccttgcttcattgtcaatttgtatcttga---ccagGGAGCTGTCAACTTTGCATTGATGATGTCACAAATGGAGGGAGGTTGTCCAGTAGACTACAACACTATCACTGATCTCTTCCTTCAG

upper sequence: GLYMA18G02960.1 (Glycine max), 3'ss of exon 14
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 3'ss of exon 14
gtatgagagaatcctctgtagttcatattaactatttctttgtatttctcccattgtctgccacactgttggataattgattatcaaattatatattttctgacatggaaattctataactatttcatctcaatttgcagaaattaatagttgtaaaaactaattcaacaactttcttttttcattttggtttctagGGTGCTGTTAATTTTGCATTAATGATGTCGCAAATGGAGGGAGGTTGCCCAGTTGATTACAACACCATAACTGATCTGTTTCTTCAG
                                                                                                 | |||   |    ||     |||||     |  |  | |  | | || ||||||  |          | |  | |||  ||||||   |     ||  |||| || || |||||||| ||||||||||| |||||||| |||||||| |||||||| |||||||| || |||||||| || ||||||
----------------------------------------------------------------------------------------------gcctgctgttgttt--atcaagcaactaagcttttgccctgta-aaagatcaatagtcttttttttctgctaattatcttcttttttttcctgctaattgcagGGAGCAGTAAATTTTGCTTTAATGATGTCCCAAATGGAAGGAGGTTGTCCAGTTGACTACAACACTATCACTGATCTTTTCCTTCAG

upper sequence: GLYMA18G02960.1 (Glycine max), 3'ss of exon 14
lower sequence: AT3G08530.1 (Arabidopsis thaliana), 3'ss of exon 14
----gtatgagagaatcctctgtagttcatattaactatttctttgtatttctcccattgtctgccacactgttggataattgattatcaaattatatattttctgacatgg-aaattctataact--atttcatctcaatttgcagaaattaatagttgtaaaaactaattcaacaactttcttttttcattttggtttctagGGTGCTGTTAATTTTGCATTAATGATGTCGCAAATGGAGGGAGGTTGCCCAGTTGATTACAACACCATAACTGATCTGTTTCTTCAG
    || || | | |  ||   || ||   |   ||||     |   |   ||    ||       | | ||| |  |||    |     | ||||  ||   || || ||   |||  | | ||   || | || |  | | | ||||  |  |         |   |  |||| |      | |||| |||||  |||  |||| || || |||||||||||||||||||| |||||||| |||||||  |||||||| ||||||||||| |||||||| |||||||||
gttagtgtg-gtgcactcttgatacttgcaacatactaaactatgaaaggact----ttactgaatata-tgtggcgtaagcactggaagagttatgaatcaactaacttgttgaataatttgacctgatgttatatagaat-gaagaatctttttcccaccgtattaatatcaatag-----tcttttaatttttatttgcagGGAGCAGTAAATTTTGCATTAATGATGTCTCAAATGGAAGGAGGTTCTCCAGTTGACTACAACACCATCACTGATCTTTTTCTTCAG

upper sequence: GLYMA18G02960.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 14
gtatgagagaatcctctgtagttcatattaactatttctttgtatttctcccattgtctgccacactgttggataattgattatcaaattatatattttctgacatggaaattctataactatttcatctcaatttgcagaaattaatagttgtaaaaactaattcaacaactttcttttttcattttggtttctagGGTGCTGTTAATTTTGCATTAATGATGTCGCAAATGGAGGGAGGTTGCCCAGTTGATTACAACACCATAACTGATCTGTTTCTTCAG
                                                       || ||| |  || ||   || |   ||  || ||| |   |||| ||| || |   ||| | ||    |     | |||||    |||||        |||||  |   | |         ||| ||   ||||| ||  |||| ||||| ||||||||  |||||||||| ||||||||||||||||| ||  ||||||  || || ||||||||||| |||||||||
-------------------------------------------------------gtatgcaagcctttttc-tagt--gtttgcagattttcc-ttttatgaaattg---ttccagaaaggatcagcttaaatttc---aaattgg-----ataaaattttcctgagtggaggcatttatt---tttgggttgcagGGAGCTGTAAATTTTGCGCTAATGATGTCTCAAATGGAGGGAGGTTGTCCCATTGATTTTAATACGATAACTGATCTCTTTCTTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attaatagttgtaaaaactaattcaacaactttcttttttcattttggtttctagGGTGCTGTTAATTTTGCATTAATGATGTCGCAAATGGAGGGAGGTTGCCCAGTTGATTACAACACCATAACTGATCTGTTTCTTCAG
               aactaat  putative branch site (score: 2)
                             ctttcttttttcattt  putative PPT
                              tttcttttttcatttt  TA-rich tract