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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgtgctgtctgtattaataagaactgttgtgatcctttatcaacctgatcttccgtccaactcccaagacctcaggcataaaattgttttagattgtaaacattaaaaaatgtttatacacatttatcttgttatcttgctagGTGTGGAAGATGCAAATTGCAAAATGTCAAGGTATTGAACAAGGGAATTGATTGGACTTGCGGTGAAAACATATACTGGAAACACGATGTGCAGCGATCT

Basic information

species Glycine max
transcript GLYMA18G02900.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G02900.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv13s0067g01470.t01 (Vitis vinifera), 3'ss of exon 14
gtactgtgctgtctgtattaataagaactgttgtgatcctttatcaacctgatcttccgtccaactcccaagacctcaggcataaaattgttttagattgtaaacattaaaaaatgtttatacacatttatcttgttatcttgctagGTGTGGAAGATGCAAATTGCAAAATGTCAAGGTATTGAACAAGGGAATTGATTGGACTTGCGGTGAAAACATATACTGGAAACACGATGTGCAGCGATCT
                                                      |    | |   ||||   |  |||   ||||   | || |  |   |  | ||||||     |||||   ||   ||    | | ||   ||||||||||||||| || |||||||| ||||| |||  |||||| |||||| | |||| ||  ||||| || ||||| ||||| || |||||||| || | |
-----------------------------------------------------gtaatatgctgttcccgtaatttcaaaaataa---ttttctgaacaatggaaattaaatttgatttat---cacgaatgagttcaactgtgtagGTGTGGAAGATGTAAGTTGCAAAACGTCAAAGTACAGAACAAAGGAATTAACTGGAATTCTGGTGACAATATATATTGGAAGCATGATGTGCAACGGTTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22523462|gb|BU082273.1|BU082273
EST:     TCAATGAAGATTAATGAGAACGGTGAATCCATACTACATTATGGCCAAAG                         GTGTGGAAGATGCAAATTGCAAAATGTCAAGGTATTGAACAAGGGAATTGA
genomic: TCAATGAAGATTAATGAGAACGGTGAATCCATACTACATTATGGCCAAAGgtactgtgct ... atcttgctagGTGTGGAAGATGCAAATTGCAAAATGTCAAGGTATTGAACAAGGGAATTGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagattgtaaacattaaaaaatgtttatacacatttatcttgttatcttgctagGTGTGGAAGATGCAAATTGCAAAATGTCAAGGTATTGAACAAGGGAATTGATTGGACTTGCGGTGAAAACATATACTGGAAACACGATGTGCAGCGATCT
                                           ttatctt  CT-rich tract
     ttgtaaacattaaaaa  TA-rich tract