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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ggtacattctaattttctctgtggcctctctttcctcaactcaattggggtttatctgttaactcacaatcggctttacttttcaGGATGAGGGTGTGAAACATACAGCACAGTTGATGTACCAGACCGCACTCTTCGAAAGTGGCTTCCTGCTTGATGATCCCAAGGATTTTGCTTCCCGTATT

Basic information

species Glycine max
transcript GLYMA17G37820.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58024657|gb|CX711398.1|CX711398
EST:     AGGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGA                         GGATGAGGGTGTGAAACATACAGCACAGTTGATGTACCAGACCGCACTCTT
genomic: AGGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAggtacattct ... ttacttttcaGGATGAGGGTGTGAAACATACAGCACAGTTGATGTACCAGACCGCACTCTT
EST: gi|48575291|gb|CO036330.1|CO036330
EST:     AGGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGA                         GGATGAGGGTGTGAAACATACAGCACAGTTGATGTAC
genomic: AGGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAggtacattct ... ttacttttcaGGATGAGGGTGTGAAACATACAGCACAGTTGATGTAC
EST: gi|193630748|gb|FK580927.1|FK580927
EST:     AGGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGA                         GGATGAGGGTGTGAAACATACAGCACAGTTGATGTACCAGACCGCACTCTT
genomic: AGGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAggtacattct ... ttacttttcaGGATGAGGGTGTGAAACATACAGCACAGTTGATGTACCAGACCGCACTCTT
EST: gi|298171035|gb|HO016067.1|HO016067
EST:     AGGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGA                         GGATGAGGGTGTGAAACATACAGCACAGTTGATGTACCAGACCGCACTCTT
genomic: AGGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAggtacattct ... ttacttttcaGGATGAGGGTGTGAAACATACAGCACAGTTGATGTACCAGACCGCACTCTT
EST: gi|192324322|gb|FK018298.1|FK018298
EST:     AGGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGA                         GGATGAGGGTGTGAAACATACAGCACAGTTGATGTACCAGACCGCACTCTT
genomic: AGGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAggtacattct ... ttacttttcaGGATGAGGGTGTGAAACATACAGCACAGTTGATGTACCAGACCGCACTCTT
EST: gi|5687855|gb|AI940834.1|AI940834
EST:     AGGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGA                         GGATGAGGGTGTGAAACATACAGCACAGTTGATGTACCAGACCGCACTCTT
genomic: AGGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAggtacattct ... ttacttttcaGGATGAGGGTGTGAAACATACAGCACAGTTGATGTACCAGACCGCACTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcctcaactcaattggggtttatctgttaactcacaatcggctttacttttcaGGATGAGGGTGTGAAACATACAGCACAGTTGATGTACCAGACCGCACTCTTCGAAAGTGGCTTCCTGCTTGATGATCCCAAGGATTTTGCTTCCCGTATT
                              aactcac  putative branch site (score: 2)
                                           ctttacttttc  putative PPT
                                            tttactttt  TA-rich tract