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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagaactagacttggaattactttctttatagtatataatctagtttgctaactattttgctgtctctctcagTTTATTCAAATGGACATCTACAGCCTGGGCTG

Basic information

species Glycine max
transcript GLYMA17G18540.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254338075|gb|GR849707.1|GR849707
EST:     GCTAAAAGAATTGTTGGAGGCCCGCAAATCTTCTCCCCGTGATAACTCTG                         TTTATTCAAATGGACATCTACAGCCTGGGCTG
genomic: GCTAAAAGAATTGTTGGAGGCCCGCAAATCTTCTCCCCGTGATAACTCTGgtagaactag ... tctctctcagTTTATTCAAATGGACATCTACAGCCTGGGCTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactttctttatagtatataatctagtttgctaactattttgctgtctctctcagTTTATTCAAATGGACATCTACAGCCTGGGCTG
                            tgctaac  putative branch site (score: 1)
                                     ttttgctgtctctctc  putative PPT
       tttatagtatataatc  TA-rich tract