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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaattctaagatgggaaatgaaaagggtgtaccttacacctagttagtcgacaaaataagaaagttttttattgcagaaaaaggtcatgaaattagaaatagaacttttgctttttcatttgttaaaattcatttatgtaccatgtttatgcagGATACAACTCGTGAAAATAAGTTGCGCTTGTTAATGATTCTTGCGTCCATATATCCTGAGAAATTTGAGGCTGAAAAGGGTCTGAATTTAATGAAG

Basic information

species Glycine max
transcript GLYMA17G14450.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193354779|gb|FK320372.1|FK320372
EST:     TTGGAGACGCAGGGATGAAAGATGTGATCAAATTTTTTACTACAAACGAA                         GATACAACTCGTGAAAATAAGTTGCGCTTGTTAATGATTCTTGCGTCCATA
genomic: TTGGAGACGCAGGGATGAAAGATGTGATCAAATTTTTTACTACAAACGAAgtaagtaatt ... gtttatgcagGATACAACTCGTGAAAATAAGTTGCGCTTGTTAATGATTCTTGCGTCCATA
EST: gi|213600619|gb|DB956179.1|DB956179
EST:     TTGGAGACGCAGGGATGAAAGATGTGATCAAATTTTTTACTACAAACGAA                         GATACAACTCGTGAAAATAAGTTGCGCTTGTTAATGATTCTTGCGTCCATA
genomic: TTGGAGACGCAGGGATGAAAGATGTGATCAAATTTTTTACTACAAACGAAgtaagtaatt ... gtttatgcagGATACAACTCGTGAAAATAAGTTGCGCTTGTTAATGATTCTTGCGTCCATA
EST: gi|193553032|gb|FK507443.1|FK507443
EST:     TTGGAGACGCAGGGATGAAAGATGTGATCAAATTTTTTACTACAAACGAA                         GATACAACTCGTGAAAATAAGTTGCGCTTGTTAATGATTCTTGCGTCCATA
genomic: TTGGAGACGCAGGGATGAAAGATGTGATCAAATTTTTTACTACAAACGAAgtaagtaatt ... gtttatgcagGATACAACTCGTGAAAATAAGTTGCGCTTGTTAATGATTCTTGCGTCCATA
EST: gi|193416170|gb|FK378036.1|FK378036
EST:     TTGGAGACGCAGGGATGAAAGATGTGATCAAATTTTTTACTACAAACGAA                         GATACAACTCGTGAAAATAAGTTGCGCTTGTTAATGATTCTTGCGTCCATA
genomic: TTGGAGACGCAGGGATGAAAGATGTGATCAAATTTTTTACTACAAACGAAgtaagtaatt ... gtttatgcagGATACAACTCGTGAAAATAAGTTGCGCTTGTTAATGATTCTTGCGTCCATA
EST: gi|193322590|gb|FK290366.1|FK290366
EST:     TTGGAGACGCAGGGATGAAAGATGTGATCAAATTTTTTACTACAAACGAA                         GATACAACTCGTGAAAATAAGTTGCGCTTGTTAATGATTCTTGCGTCCATA
genomic: TTGGAGACGCAGGGATGAAAGATGTGATCAAATTTTTTACTACAAACGAAgtaagtaatt ... gtttatgcagGATACAACTCGTGAAAATAAGTTGCGCTTGTTAATGATTCTTGCGTCCATA
EST: gi|193329260|gb|FK295630.1|FK295630
EST:     TTGGAGACGCAGGGATGAAAGATGTGATCAAATTTTTTACTACAAACGAA                         GATACAACTCGTGAAAATAAGTTGCGCTTGTTAATGATTCTTGCGTCCATA
genomic: TTGGAGACGCAGGGATGAAAGATGTGATCAAATTTTTTACTACAAACGAAgtaagtaatt ... gtttatgcagGATACAACTCGTGAAAATAAGTTGCGCTTGTTAATGATTCTTGCGTCCATA
EST: gi|308098914|gb|HO760755.1|HO760755
EST:     TTGGAGACGCAGGGATGAAAGATGTGATCAAATTTTTTACTACAAACGAA                         GATACAACTCGTGAAAATAAGTTGCGCTTGTTAATGATTCTTGCGTCCATA
genomic: TTGGAGACGCAGGGATGAAAGATGTGATCAAATTTTTTACTACAAACGAAgtaagtaatt ... gtttatgcagGATACAACTCGTGAAAATAAGTTGCGCTTGTTAATGATTCTTGCGTCCATA
EST: gi|193398962|gb|FK363862.1|FK363862
EST:     TTGGAGACGCAGGGATGAAAGATGTGATCAAATTTTTTACTACAAACGAA                         GATACAACTCGTGAAAATAAGTTGCGCTTGTTAATGATTCTTGCGTCCATA
genomic: TTGGAGACGCAGGGATGAAAGATGTGATCAAATTTTTTACTACAAACGAAgtaagtaatt ... gtttatgcagGATACAACTCGTGAAAATAAGTTGCGCTTGTTAATGATTCTTGCGTCCATA
EST: gi|193365623|gb|FK329820.1|FK329820
EST:     TTTTTTACTACAAACGAA                         GATACAACTCGTGAAAATAAGTTGCGCTTGTTAATGATTCTTGCGTCCATA
genomic: TTTTTTACTACAAACGAAgtaagtaatt ... gtttatgcagGATACAACTCGTGAAAATAAGTTGCGCTTGTTAATGATTCTTGCGTCCATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagaacttttgctttttcatttgttaaaattcatttatgtaccatgtttatgcagGATACAACTCGTGAAAATAAGTTGCGCTTGTTAATGATTCTTGCGTCCATATATCCTGAGAAATTTGAGGCTGAAAAGGGTCTGAATTTAATGAAG
            tttttcatttgttaaa  TA-rich tract