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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgctcattcatttgtgatggtgtttgtattttgtacctttcactatcatagtcttttgtagttatttattgattctagacatttggcttcttcttttagATCAATCAATTAGAGAAGGACAAAGATGTTATTGCTCAGGCACAAGCAATTGCAGCCCTTGAGGCATCCCCACAGCTATCATTTTCTATTGTTAATGCCC

Basic information

species Glycine max
transcript GLYMA17G13080.2
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G13080.1 (Glycine max), 3'ss of exon 14
lower sequence: AT1G73960.1 (Arabidopsis thaliana), 3'ss of exon 14
---atgctcattcatttgtgatggtgtttgtattttgtacctttcactatcatagtcttttgtagttatttattgattctagacatttggcttcttcttttagATCAATCAATTAGAGAAGGACAAAGATGTTATTGCTCAGGCACAAGCAATTGCAGCCCTTGAGGCATCCCCACAGCTATCATTTTCTATTGTTAATGCCC
    ||  |  | | || |     | |    ||  |  |    | ||  |  |  | |||  | |||  | |    || | |   | || |   ||   | || |||||||| |||||||||||  ||||||| ||||||||||||||||||||||  | ||||| || |    ||| |  || ||||| ||||| ||||| |
gtgttgtgctcttacttctagacatctcaaaatcctacattggttacagt--tcatgtttaatcgtttctcac-acttgtgggtttctgtcacttttgatcagGTCAATCAACTAGAGAAGGACGGAGATGTTGTTGCTCAGGCACAAGCAATTGCGTCACTTGAAGCCTTAAAACAACACTCCTTTTCCATTGTGAATGCAC

upper sequence: GLYMA17G13080.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv17s0000g04200.t01 (Vitis vinifera), 3'ss of exon 14
atgctcattcatttgtgatggtgtttgtattttgtacctttcactat----catagtcttttgtagttat-ttattgattctag-acatttggcttcttcttttagATCAATCAATTAGAGAAGGACAAAGATGTTATTGCTCAGGCACAAGCAATTGCAGCCCTTGAGGCATCCCCACAGCTATCATTTTCTATTGTTAATGCCC
      |||   || || ||    |  | |||| ||    |||||       ||    |||   |||| | ||| ||||  |   | | ||||  |  |   | |||| ||||||||||||| |||||| |||||| ||||||||||||||||||||||| | || |||||||  || ||||| ||||||||| |||||||||| |
------attggattctgttgaatctattgttttatataaatcacttcattctatcaaatttgaaagttttgttaatgatgttgataaaattggaattcttaatcagATTAATCAATTAGAGAGGGACAAGGATGTTGTTGCTCAGGCACAAGCAATTGCAACACTGGAGGCATTACCTCAGCTTTCATTTTCTGTTGTTAATGCTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcatagtcttttgtagttatttattgattctagacatttggcttcttcttttagATCAATCAATTAGAGAAGGACAAAGATGTTATTGCTCAGGCACAAGCAATTGCAGCCCTTGAGGCATCCCCACAGCTATCATTTTCTATTGTTAATGCCC
                      tattgat  putative branch site (score: 3)
                                     tttggcttcttctttt  putative PPT
         ttttgtagttatttat  TA-rich tract