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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatttccaaagtcctttaccttatagctggccatacatttggttttctaatcactgttattcagGTTGTAGCCTCCCAGGACTGGCCGGAAGTAACAAAGTACGCAGGATTGGTATGCGCTCAGCCTCATCGTGAGGAACTCATTCAAGATCTTTTTAAATGTT

Basic information

species Glycine max
transcript GLYMA17G12850.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G12850.1 (Glycine max), 3'ss of exon 14
lower sequence: LOC_Os06g39640.1 (Oryza sativa), 3'ss of exon 14
------gtaagtatttccaaagtcctttacc--ttatagctggccatacatttgg--ttttctaatcactgttattcagGTTGTAGCCTCCCAGGACTGGCCGGAAGTAACAAAGTACGCAGGATTGGTATGCGCTCAGCCTCATCGTGAGGAACTCATTCAAGATCTTTTTAAATGTT
       | || ||||| |  ||    |  |  | ||   |      || | |     | |||||| |     || |||||||| || || || |||||||| ||||| |||||||| || |||||||| || |||||| |||||||  | || ||||||||||||||||  ||    |
gtaaggctgagcatttctatggttacatggccatcattttttttttaacctcttaccctctctaataagctgcatgcagGTTGTTGCATCTCAAGACTGGCCAGAAGTTACAAAGTATGCTGGATTGGTGTGTGCTCAGGCTCATCGGCAAGAGCTCATTCAAGATCTTTACAAGACAT

upper sequence: GLYMA17G12850.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv11s0016g04620.t01 (Vitis vinifera), 3'ss of exon 14
gtaagtatttccaaagtcctttaccttatagctggccat---acatttggttttcta---atcactgttattcagGTTGTAGCCTCCCAGGACTGGCCGGAAGTAACAAAGTACGCAGGATTGGTATGCGCTCAGCCTCATCGTGAGGAACTCATTCAAGATCTTTTTAAATGTT
||||| || |  |||    | |  |  | |     |  |   |  ||||  |   ||   || ||  |||| ||||| ||||||||||| |||||||| ||||| || ||||| || ||||||||||| |||||| |||||||  | ||||| ||||||||| | | ||||   |
gtaaggatatgaaaacctgtatttcccaaaatctacagttccatgtttgagtccatattgattacaattatacagGTAGTAGCCTCCCAAGACTGGCCAGAAGTCACCAAGTATGCTGGATTGGTATGTGCTCAGGCTCATCGGCAAGAACTTATTCAAGATTTGTATAAAACCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15285585|gb|BI469476.1|BI469476
EST:     CAGAATCTGGAGAGGACCCTTGTCCATCCATTGCTGCT                         GTTGTAGCCTCCCAGGACTGGCCGGAAGTAACAAAGTACGCAGGATTGGTA
genomic: CAGAATCTGGAGAGGACCCTTGTCCATCCATTGCTGCTgtaagtattt ... tgttattcagGTTGTAGCCTCCCAGGACTGGCCGGAAGTAACAAAGTACGCAGGATTGGTA
EST: gi|26269315|gb|CA820378.1|CA820378
EST:     ATGTAACACATCCAGAATCTGGAGAGGACCCTTGTCCATCCATTGCTGCT                         GTTGTAGCCTCCCAGGACTGGCCGGAAGTAACAAAGTACGCAGGATTGGTA
genomic: ATGTAACACATCCAGAATCTGGAGAGGACCCTTGTCCATCCATTGCTGCTgtaagtattt ... tgttattcagGTTGTAGCCTCCCAGGACTGGCCGGAAGTAACAAAGTACGCAGGATTGGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtcctttaccttatagctggccatacatttggttttctaatcactgttattcagGTTGTAGCCTCCCAGGACTGGCCGGAAGTAACAAAGTACGCAGGATTGGTATGCGCTCAGCCTCATCGTGAGGAACTCATTCAAGATCTTTTTAAATGTT
                                   ttctaat  putative branch site (score: 2)
                                 ttttctaat  TA-rich tract