Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctgtaagtctttggtagttatgtaagtttcattctcattatttgttgctagatgtagtagacacttgacacatggtgccaactctatttgttagtagtcaatcttttatatgattctgttagatcttagtatcaaatgttttcatttttgcagGATCTGCAGTTGGATTCAAGTTGGATAGTCTTTTAAAGCTCACTGACACTCGTGCTTCTAACAGTAAAATGACACTGATGCATTATCTTTGCAAG

Basic information

species Glycine max
transcript GLYMA17G11100.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G11100.1 (Glycine max), 3'ss of exon 14
lower sequence: AT5G07740.1 (Arabidopsis thaliana), 3'ss of exon 11
gtaagtctgtaagtctttggtagttatgtaagtttcattctcattatttgt-tgctagatgtagtagacacttgacacatggtgccaactctatttgttagtagtcaatcttttatatgattctgttagatcttagtatcaaatgttttcatttttgcagGATCTGCAGTTGGATTCAAGTTGGATAGTCTTTTAAAGCTCACTGACACTCGTGCTTCTAACAGTAAAATGACACTGATGCATTATCTTTGCAAG
                           |||||| | |||    |||||  | | ||| || |  | | |||  ||||     ||| |  | | |||||  |||    ||    | | || ||   |  |||| |         || |||  ||| ||||||  |||| ||||||||||||||||| ||| | |  ||  | | ||| || |||||| ||||||| || ||||| || ||||||||||||||||||
---------------------------gtaagtattatttatgttattcttgttctacatctttttg-cacaagacat----tgctagttgt-tttgtctgta-cggataacctttgtggttg-atatgatcct---------tgctttgctttctgcagGCGCTGCTGTTGGATTCAAGTTGGACAGTTTATCGAAATTAAGTGATACACGTGCTGCTAACAGCAAGATGACTCTCATGCATTATCTTTGCAAG

upper sequence: GLYMA17G11100.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv17s0000g06640.t01 (Vitis vinifera), 3'ss of exon 13
gtaagtctgtaagtctttggtagttatgtaagtttcattctcattatttgttgctagatgtagtagacacttgacacatggtgccaactctatttgttagtagtcaatcttttatatgattctgttagatcttagtatcaaatgttttcatttttgcagGATCTGCAGTTGGATTCAAGTTGGATAGTCTTTTAAAGCTCACTGACACTCGTGCTTCTAACAGTAAAATGACACTGATGCATTATCTTTGCAAG
                              |   |  || |  || |||  || |   ||   || | | |  | |||| |  |||  | ||| ||||  | || || | |  || ||| |                        |   | |||| |||| ||||| ||||||||||||||||| ||||||||||| |||||||| || ||||| |||||||| || |||||||| |||||||||||||| |||
------------------------------aacattgttgtgtttttttagtgttgactg-gataaaaattcaa-acatagc-ccacttttatgtgttgat-gtgaagcatccat-tgact------------------------tccaagttttacagGTTCTGCGGTTGGATTCAAGTTGGACAGTCTTTTAAAACTCACTGATACACGTGCCTCTAACAGCAAGATGACACTTATGCATTATCTTTGTAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192304259|gb|FG993543.1|FG993543
EST:     GAAGAAAATTCTTTATTTGGGTAATACATTGAATCAAGGAACGGCAAGGG                         GATCTGCAGTTGGATTCAAGTTGGATAGTCTTTTAAAGCTCACTGACACTC
genomic: GAAGAAAATTCTTTATTTGGGTAATACATTGAATCAAGGAACGGCAAGGGgtaagtctgt ... atttttgcagGATCTGCAGTTGGATTCAAGTTGGATAGTCTTTTAAAGCTCACTGACACTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatcttttatatgattctgttagatcttagtatcaaatgttttcatttttgcagGATCTGCAGTTGGATTCAAGTTGGATAGTCTTTTAAAGCTCACTGACACTCGTGCTTCTAACAGTAAAATGACACTGATGCATTATCTTTGCAAG
                                        ttttcattttt  CT-rich tract
                                   aaatgttttcattttt  TA-rich tract