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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttataatctacttgatattctatcttctaattctttcttccatccatctactatgccaattatttattttgttttttatttgcactttagGAAAGATTAGCTCTGAAAGAAGGAGGAGCTGAACTCGGCCCCTCAGTTTTATTCTTTGGATGCAGGAACCGTCAAATG

Basic information

species Glycine max
transcript GLYMA17G07050.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G07050.2 (Glycine max), 3'ss of exon 14
lower sequence: Vv11s0052g00880.t01 (Vitis vinifera), 3'ss of exon 14
gtttataatctacttgatattctatcttctaattctttcttccatccat-ctactatgccaattatttattttgttttttatttgcacttta--gGAAAGATTAGCTCTGAAAGAAGGAGGAGCTGAACTCGGCCCCTCAGTTTTATTCTTTGGATGCAGGAACCGTCAAATG
|||| ||||  ||    |   | || |    | |    | | | | | |  || |    |||     |    || ||| | ||| || || |  ||||||||| ||||| |||||||  ||||| ||||| ||  | ||  | |||||||||||||||||||||||  |||||
gttt-taattgacagacttgaccatttagcgacttcggccttcttacttattattgcttcaaccgactgacctgatttatgttttcatttcacagGAAAGATTTGCTCTTAAAGAAGCTGGAGCAGAACTAGGATCATCCATATTATTCTTTGGATGCAGGAACCGAAAAATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21594304|gb|BQ610119.1|BQ610119
EST:     TCATGATTGGTCCTGGCACTGGATTGGCTCCTTTCAGAGGTTTCTTGCAG                         GAAAGATTAGCTCTGAAAGAAGGAGGAGCTGAACTCGGCCCCTCAGTTTTA
genomic: TCATGATTGGTCCTGGCACTGGATTGGCTCCTTTCAGAGGTTTCTTGCAGgtttataatc ... tgcactttagGAAAGATTAGCTCTGAAAGAAGGAGGAGCTGAACTCGGCCCCTCAGTTTTA
EST: gi|15203101|gb|BI425869.1|BI425869
EST:     TCATGATTGGTCCTGGCACTGGATTGGCTCCTTTCAGAGGTTTCTTGCAG                         GAAAGATTAGCTCTGAAAGAAGGAGGAGCTGAACTCGGCCCCTCAGTTTTA
genomic: TCATGATTGGTCCTGGCACTGGATTGGCTCCTTTCAGAGGTTTCTTGCAGgtttataatc ... tgcactttagGAAAGATTAGCTCTGAAAGAAGGAGGAGCTGAACTCGGCCCCTCAGTTTTA
EST: gi|254332042|gb|GR846245.1|GR846245
EST:     TCATGATTGGTCCTGGCACTGGATTGGCTCCTTTCAGAGGTTTCTTGCAG                         GAAAGATTAGCTCTGAAAGAAGGAGGAGCTGAACTCGGCCCCTCAGTTTTA
genomic: TCATGATTGGTCCTGGCACTGGATTGGCTCCTTTCAGAGGTTTCTTGCAGgtttataatc ... tgcactttagGAAAGATTAGCTCTGAAAGAAGGAGGAGCTGAACTCGGCCCCTCAGTTTTA
EST: gi|105633983|gb|DW247346.1|DW247346
EST:     TCATGATTGGTCCTGGCACTGGATTGGCTCCTTTCAGAGGTTTCTTGCAG                         GAAAGATTAGCTCTGAAAGAAGGAGGAGCTGAACTCGGCCCCTCAGTTTTA
genomic: TCATGATTGGTCCTGGCACTGGATTGGCTCCTTTCAGAGGTTTCTTGCAGgtttataatc ... tgcactttagGAAAGATTAGCTCTGAAAGAAGGAGGAGCTGAACTCGGCCCCTCAGTTTTA
EST: gi|254341892|gb|GR853029.1|GR853029
EST:     TCATGATTGGTCCTGGCACTGGATTGGCTCCTTTCAGAGGTTTCTTGCAG                         GAAAGATTAGCTCTGAAAGA-GGAGGAGCTGA
genomic: TCATGATTGGTCCTGGCACTGGATTGGCTCCTTTCAGAGGTTTCTTGCAGgtttataatc ... tgcactttagGAAAGATTAGCTCTGAAAGAAGGAGGAGCTGA
EST: gi|4286168|gb|AI441008.1|AI441008
EST:     TCATGATTGGTCCTGGCACTGGATTGGCTCCTTTCAGAGGTTTCTTGCAN                         GAAAGATTAGCTCTGAAAGAAGGAGGAGCTGAACTCGGCCCCTCAGTTTTA
genomic: TCATGATTGGTCCTGGCACTGGATTGGCTCCTTTCAGAGGTTTCTTGCAGgtttataatc ... tgcactttagGAAAGATTAGCTCTGAAAGAAGGAGGAGCTGAACTCGGCCCCTCAGTTTTA
EST: gi|58024838|gb|CX711579.1|CX711579
EST:     TCATGATNGGTCCTGGCACTGGATTGGCTCCTTTCAGAGGTTTCTTGCAG                         GAAAGATTAGCTCTGAAAGAAGGAGGAGCTGAACTCGGCCCCTCAGTTTTA
genomic: TCATGATTGGTCCTGGCACTGGATTGGCTCCTTTCAGAGGTTTCTTGCAGgtttataatc ... tgcactttagGAAAGATTAGCTCTGAAAGAAGGAGGAGCTGAACTCGGCCCCTCAGTTTTA
EST: gi|10710524|gb|BF010242.1|BF010242
EST:     TCATGATTGGTCCTGGCACTGGATTGGCTCCTTTCAGAGGTTTCTTGCAG                         GAAAGATTAGCTCTGAAAGAAGGAGGAGCTGAACTCGGCCCCTCAGTTTTA
genomic: TCATGATTGGTCCTGGCACTGGATTGGCTCCTTTCAGAGGTTTCTTGCAGgtttataatc ... tgcactttagGAAAGATTAGCTCTGAAAGAAGGAGGAGCTGAACTCGGCCCCTCAGTTTTA
EST: gi|254346951|gb|GR856673.1|GR856673
EST:     CTCCTTTCAGAGGTTTCTTGCAG                         GAAAGATTAGCTCTGAAAGAAGGAGGAGCTGAACTCGGCCCCTCAGTTTTA
genomic: CTCCTTTCAGAGGTTTCTTGCAGgtttataatc ... tgcactttagGAAAGATTAGCTCTGAAAGAAGGAGGAGCTGAACTCGGCCCCTCAGTTTTA
EST: gi|105634392|gb|DW247541.1|DW247541
EST:     TCATGATTGGTCCTGGCACTGGATTGGCTCCCTTCAGAGGTTTCTTGCAG                         GAAAGATTAGCTCTGAAAGAAGGAGGAGCTGAACTCGGCCCCTCAGTTTTA
genomic: TCATGATTGGTCCTGGCACTGGATTGGCTCCTTTCAGAGGTTTCTTGCAGgtttataatc ... tgcactttagGAAAGATTAGCTCTGAAAGAAGGAGGAGCTGAACTCGGCCCCTCAGTTTTA
EST: gi|9258034|gb|BE346181.1|BE346181
EST:     TCATGATTGGTCCTGGCACTGGATTGGCTCCTTTCAGAGGTTTCTTGCAG                         GAAAGATTAGCTCTGAAAGAAGGAGGAGCTGAACTCGGCCCCTCAGTTTTA
genomic: TCATGATTGGTCCTGGCACTGGATTGGCTCCTTTCAGAGGTTTCTTGCAGgtttataatc ... tgcactttagGAAAGATTAGCTCTGAAAGAAGGAGGAGCTGAACTCGGCCCCTCAGTTTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttccatccatctactatgccaattatttattttgttttttatttgcactttagGAAAGATTAGCTCTGAAAGAAGGAGGAGCTGAACTCGGCCCCTCAGTTTTATTCTTTGGATGCAGGAACCGTCAAATG
                               ttttgttttttattt  CT-rich tract
                      aattatttattttgtt  TA-rich tract