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...ctaacatattccttaaaatcaagtgggagtatattagcctccagatgcattaattagagtgcatatgaaacatccattaatattgtacatattgttgcagTCAATATATGTGATGGACTACTCATTGCTGGTTGGAGTGGATGAGGAAAAGCATGAGCTGGTTTTAGGTATCATTGATTTTATGAGGCAGTATACATGGG
species | Glycine max |
transcript | GLYMA17G05000.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: CAAAGCGGTTGCTTGAGAGGGCCGTGTGGAATGACACTGCCTTCCTTGCA TCAATATATGTGATGGACTACTCATTGCTGGTTGGAGTGGATGAGGAAAAGEST: gi|19935098|gb|BQ080128.1|BQ080128
genomic: CAAAGCGGTTGCTTGAGAGGGCCGTGTGGAATGACACTGCCTTCCTTGCAgtaagtctga ... attgttgcagTCAATATATGTGATGGACTACTCATTGCTGGTTGGAGTGGATGAGGAAAAG
EST: CAAAGCGGTTGCTTGAGAGGGCCGTGTGGAATGACACTGCCTTCCTTGCA TCAATATATGTGATGGACTACTCATTGCTGGTTGGAGTGGATGATGAAAAGEST: gi|17152856|gb|BM142789.1|BM142789
genomic: CAAAGCGGTTGCTTGAGAGGGCCGTGTGGAATGACACTGCCTTCCTTGCAgtaagtctga ... attgttgcagTCAATATATGTGATGGACTACTCATTGCTGGTTGGAGTGGATGAGGAAAAG
EST: CAAAGCGGTTGCTTGAGAGGGCCGTGTGGAATGACACTGCCTTCCTTGCA TCAATATATGTGATGGACTACTCATTGCTG
genomic: CAAAGCGGTTGCTTGAGAGGGCCGTGTGGAATGACACTGCCTTCCTTGCAgtaagtctga ... attgttgcagTCAATATATGTGATGGACTACTCATTGCTG
tgcattaattagagtgcatatgaaacatccattaatattgtacatattgttgcagTCAATATATGTGATGGACTACTCATTGCTGGTTGGAGTGGATGAGGAAAAGCATGAGCTGGTTTTAGGTATCATTGATTTTATGAGGCAGTATACATGGG
cattaat putative branch site (score: 3)
attaatattgtacata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaacatattccttaaaatcaagtgggagtatattagcctccagatgcattaattagagtgcatatgaaacatccattaatattgtacatattgttgcagTCAATATATGTGATGGACTACTCATTGCTGGTTGGAGTGGATGAGGAAAAGCATGAGCTGGTTTTAGGTATCATTGATTTTATGAGGCAGTATACATGGG
- - - - - - - - - - - gtgggag
- - - - - - - - - - - - - - - - - - gcctcca
- - - - - - - - - - - - - - - - - - - - - - -tgcatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatcca