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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatgtttggcttcagctaatctaaccttttcatatgtcaaatcccatatatgatgaatgtttctacttatctgggtccggtccggtgattacgttataatgttttgaccaaacttccttggacttgtcatatgtgttgtacagTATGAAGTTTTTCATCTCAAACAGAGATTGCAATCAATGGAAAATCGAGCATCTACTACACCGAGAAAACCGTTCCATGTGCAGTGA

Basic information

species Glycine max
transcript GLYMA17G02680.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208321347|gb|GE125504.1|GE125504
EST:     CAACAAGAGGAGTTATTGCAGGAGAAAGAGCAAGAGCATTCCAACTACAG                         TATGAAGTTTTTCATCTCAAACAGAGATTGCAATCAATGGAAAATCGAGCA
genomic: CAACAAGAGGAGTTATTGCAGGAGAAAGAGCAAGAGCATTCCAACTACAGgtacatgttt ... tgttgtacagTATGAAGTTTTTCATCTCAAACAGAGATTGCAATCAATGGAAAATCGAGCA
EST: gi|193525136|gb|FK479185.1|FK479185
EST:     CAACAAGAGGAGTTATTGCAGGAGAAAGAGCAAGAGCATTCCAACTACAG                         TATGAAGTTTTTCATCTCAAACAGAGATTGCAATCAATGGAAAATACGAGC
genomic: CAACAAGAGGAGTTATTGCAGGAGAAAGAGCAAGAGCATTCCAACTACAGgtacatgttt ... tgttgtacagTATGAAGTTTTTCATCTCAAACAGAGATTGCAATCAATGGAAAAT-CGAGC
EST: gi|193456209|gb|FK423921.1|FK423921
EST:     CAACAAGAGGAGTTATTGCAGGAGAAAGAGCAAGAGCATTCCAACTACAG                         TATGAAGTTTTTCATCTCAAACAGAGATTGCAATCAATGGAAAATCGAGCA
genomic: CAACAAGAGGAGTTATTGCAGGAGAAAGAGCAAGAGCATTCCAACTACAGgtacatgttt ... tgttgtacagTATGAAGTTTTTCATCTCAAACAGAGATTGCAATCAATGGAAAATCGAGCA
EST: gi|207826760|gb|GD800249.1|GD800249
EST:     CAACAAGAGGAGTTATTGCAGGAGAAAGAGCAAGAGCATTCCAACTACAG                         TATGAAGTTTTTCATCTCAAACAGAGATTGCAATCAATGGAAAATCGAGCA
genomic: CAACAAGAGGAGTTATTGCAGGAGAAAGAGCAAGAGCATTCCAACTACAGgtacatgttt ... tgttgtacagTATGAAGTTTTTCATCTCAAACAGAGATTGCAATCAATGGAAAATCGAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacgttataatgttttgaccaaacttccttggacttgtcatatgtgttgtacagTATGAAGTTTTTCATCTCAAACAGAGATTGCAATCAATGGAAAATCGAGCATCTACTACACCGAGAAAACCGTTCCATGTGCAGTGA
             ttttgac  putative branch site (score: 3)
     ttataatgttttga  TA-rich tract