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...tcttttagaacaattcaaattcaagaaggctggtggatatataagataactttttgtttagggtgcctttcatcattgtctcattattaatcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAAGAAACAAAATATTCAGAAAAGAAAACCAAAGAAAAAGGAAACTAATTCA
species | Glycine max |
transcript | GLYMA16G31860.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG TGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAAEST: gi|193411451|gb|FK378544.1|FK378544
genomic: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAA
EST: AGATCTTATAGAAAG TGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAAEST: gi|207736233|gb|GD711314.1|GD711314
genomic: AGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAA
EST: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG TGCTTGTCGTGAEST: gi|193517341|gb|FK476536.1|FK476536
genomic: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGA
EST: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG TGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAAEST: gi|208051494|gb|GD845947.1|GD845947
genomic: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAA
EST: TGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG TGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAAEST: gi|208045225|gb|GD839745.1|GD839745
genomic: TGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAA
EST: TGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG TGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAAEST: gi|208230672|gb|GE029865.1|GE029865
genomic: TGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAA
EST: GAAACTTCAATAGTACCTTGCAGATCTTATAGAAAG TGCTTGTCGTGAGAAGATTTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAEST: gi|208322026|gb|GE121311.1|GE121311
genomic: GAAACTTCAATAGTACC-TGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGA-TTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGA
EST: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG TGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGACTCAACGGAEST: gi|208258298|gb|GE054955.1|GE054955
genomic: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAG-CTCAACGGA
EST: GAAACTTCAATAGTACCTGCAGATCTTATAGAAAG TGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAAEST: gi|193672847|gb|FK619843.1|FK619843
genomic: GAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAA
EST: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG TGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGEST: gi|207717653|gb|GD697755.1|GD697755
genomic: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGG
EST: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG TGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAAEST: gi|207825899|gb|GD801054.1|GD801054
genomic: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAA
EST: GAAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG TGCTTGTCGTGAGAAGATTTTGGAGTTCGTGGAAAGAAAAGCTCAACGGAAEST: gi|208193328|gb|GD990295.1|GD990295
genomic: G-AATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAA
EST: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG TGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGEST: gi|208276575|gb|GE076997.1|GE076997
genomic: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAG
EST: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG TGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAAEST: gi|208226795|gb|GE021936.1|GE021936
genomic: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAA
EST: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG TGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGEST: gi|193727273|gb|FK666269.1|FK666269
genomic: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAG
EST: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG TGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAAEST: gi|207710468|gb|GD690704.1|GD690704
genomic: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAA
EST: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG TGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAAEST: gi|208254446|gb|GE052154.1|GE052154
genomic: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAA
EST: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG TGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAAEST: gi|193633885|gb|FK582029.1|FK582029
genomic: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAA
EST: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG TGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAAEST: gi|193316129|gb|FK282223.1|FK282223
genomic: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAA
EST: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG TGCTTGTCGTGAGAAGATTTTGGAGTTCGAGEST: gi|207809889|gb|GD782789.1|GD782789
genomic: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAG
EST: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG TGCTTGTCGTGAGAAGATTTTGGAGTTCGTGGAAAGAAAAGCTCAACGGAAEST: gi|208197780|gb|GE001158.1|GE001158
genomic: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAA
EST: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG TGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGEST: gi|193565849|gb|FK523218.1|FK523218
genomic: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAG
EST: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG TGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAAGAAAAAGCTCAACGGEST: gi|207773278|gb|GD743184.1|GD743184
genomic: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAA-GAAAA-GCTCAACGG
EST: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG TGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAAEST: gi|207794518|gb|GD767167.1|GD767167
genomic: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAA
EST: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAG TGCTTGTCGTGAGAAGATTTTGGAG
genomic: GGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGgtaatgtaaa ... tcatctacagTGCTTGTCGTGAGAAGATTTTGGAG
ataactttttgtttagggtgcctttcatcattgtctcattattaatcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAAGAAACAAAATATTCAGAAAAGAAAACCAAAGAAAAAGGAAACTAATTCA
tattaat putative branch site (score: 2)
attattaatcatcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttttagaacaattcaaattcaagaaggctggtggatatataagataactttttgtttagggtgcctttcatcattgtctcattattaatcatctacagTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAAGAAACAAAATATTCAGAAAAGAAAACCAAAGAAAAAGGAAACTAATTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - caattca
- - - - - - - - - - - - - - - tggtgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgcct