1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...catcacatgctcttcaatctcagttggacccagtattagttatgttctttgcagcataactttcttatctagattatggttgctgatattcttcaaatagGCGACAAGAAAAAACTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATAAGGTTCTCGGAGCCTCAATGTGTGGGCCTGATGCACCTGAAATTATGCAG
species | Glycine max |
transcript | GLYMA16G27210.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: CTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATACCATCTCTGG GCGACAAGAAGAAACTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATAAEST: gi|9820553|gb|BE556063.1|BE556063
genomic: CTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATACCATCTCTGGgtaagtgtag ... cttcaaatagGCGACAAGAAAAAACTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATAA
EST: CTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATACCATCTCTGG GCGACAAGAAAAAACTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATAAEST: gi|207691197|gb|GD673205.1|GD673205
genomic: CTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATACCATCTCTGGgtaagtgtag ... cttcaaatagGCGACAAGAAAAAACTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATAA
EST: CTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAA-TACCATCTCTGG GCGACAAGAAAAAACTGTTATGAAGCTTGTTGTTGATGEST: gi|21256789|gb|BQ453677.1|BQ453677
genomic: CTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATACCATCTCTGGgtaagtgtag ... cttcaaatagGCGACAAGAAAAAACTGTTATGAAGCTTGTTGTTGATG
EST: CTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATACCATCTCTGG GCGACAAGNNNNNNNCTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATAEST: gi|11412011|gb|BF424022.1|BF424022
genomic: CTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATACCATCTCTGGgtaagtgtag ... cttcaaatagGCGACAAGAAAAAA-CTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATA
EST: CTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATACCATCTCTGG GCGACAAGAAAAAACTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATAAEST: gi|15202278|gb|BI425317.1|BI425317
genomic: CTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATACCATCTCTGGgtaagtgtag ... cttcaaatagGCGACAAGAAAAAACTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATAA
EST: CTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATACCATCTCTGG GCGACAAGAAAAAACTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATAAEST: gi|193319362|gb|FK285526.1|FK285526
genomic: CTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATACCATCTCTGGgtaagtgtag ... cttcaaatagGCGACAAGAAAAAACTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATAA
EST: TGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATAACCATCTCTGG GCGACAAGAAAAEST: gi|254323261|gb|GR840066.1|GR840066
genomic: TGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATA-CCATCTCTGGgtaagtgtag ... cttcaaatagGCGACAAGAAAA
EST: CTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATACCATCTCTGG GCGACAAGAAAAAACTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATAAEST: gi|17153856|gb|BM143789.1|BM143789
genomic: CTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATACCATCTCTGGgtaagtgtag ... cttcaaatagGCGACAAGAAAAAACTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATAA
EST: CTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATACCATCTCTGG GCGACAAGAAAAAACTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATAAEST: gi|193388180|gb|FK354325.1|FK354325
genomic: CTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATACCATCTCTGGgtaagtgtag ... cttcaaatagGCGACAAGAAAAAACTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATAA
EST: CTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATACCATCTCTGG GCGACAAGAAAAEST: gi|57575684|gb|CX548659.1|CX548659
genomic: CTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATACCATCTCTGGgtaagtgtag ... cttcaaatagGCGACAAGAAAA
EST: CTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATACCATCTCTGG GCGACAAGAAAAAACTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATAA
genomic: CTGTTGGTTTTTACATCAACCTTCAATCCTATGAAAAATACCATCTCTGGgtaagtgtag ... cttcaaatagGCGACAAGAAAAAACTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATAA
tctttgcagcataactttcttatctagattatggttgctgatattcttcaaatagGCGACAAGAAAAAACTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATAAGGTTCTCGGAGCCTCAATGTGTGGGCCTGATGCACCTGAAATTATGCAG
tgctgat putative branch site (score: 3)
tattcttc CT-rich tract
atattcttcaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catcacatgctcttcaatctcagttggacccagtattagttatgttctttgcagcataactttcttatctagattatggttgctgatattcttcaaatagGCGACAAGAAAAAACTGTTATGAAGCTTGTTGTTGATGCTGAGACAGATAAGGTTCTCGGAGCCTCAATGTGTGGGCCTGATGCACCTGAAATTATGCAG
- - -catgctc
- - - - - - - caatctc
- - - - - - - - - - - - - - - - - - - - - - - - -tgcagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgat