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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattattcctagttgcattaacattctttgcgaatggtgccacttgttatgatgataaattgacaattcaagcttgcttctttctatctctttgcagACTTCTTGTGCATTGTCTCTTGGTTTTGGGGAGGATACCATCAACACATCATCGGTTCTTGTGATGCCAATGATGTCATCAAGAATGACTGGATTCAGAG

Basic information

species Glycine max
transcript GLYMA16G26550.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G26550.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv14s0068g00780.t01 (Vitis vinifera), 3'ss of exon 13
gtattattcctagttgcattaacattctttgcgaatggtgccacttgttatgatgataaattgacaattcaagcttgcttctttctatctctttgcagACTTCTTGTGCATTGTCTCTTGGTTTTGGGGAGGATACCATCAACACATCATCGGTTCTTGTGATGCCAATGATGTCATCAAGAATGACTGGATTCAGAG
            ||     |||| | ||| |    ||   || ||   |  ||||  | |||   |||   | ||    | ||| |        |||| || ||||| |||| || ||||||||||| |||||| | |||||  ||||| | | |||||||||||| ||| |||||||||  || ||||| |||||||
------------gtactgctaacttgcttagt---tgactcctctctatg-gatgcaatatttttaat---aactaatctttttgt--------gcagGCTGCTTGTTCATTATCACTTGGTTTTGGAGAGGATTCAATCAATGCATCAGCTGGTCTTGTGATGCCCATGGTGTCATCAAAGATAACTGGGTTCAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8403010|gb|BE058644.1|BE058644
EST:     TTGTCAAAGCAATACTAATAAAGGTTACAGATTTGTTGGTAAAGGCAAAG                         ACTTCTTGTGCATTGTCTCTTGGTTTTGGGGAGGATACCATCAACACATCA
genomic: TTGTCAAAGCAATACTAATAAAGGTTACAGATTTGTTGGTAAAGGCAAAGgtattattcc ... ctctttgcagACTTCTTGTGCATTGTCTCTTGGTTTTGGGGAGGATACCATCAACACATCA
EST: gi|58021111|gb|CX707853.1|CX707853
EST:     TTGTCAAAGCAATACTAATAAAGGTTACAGATTTGTTGGTAAAGGCAAAG                         ACTTCTTGTGCATTGTCTCTTGGTTTTGGGGAGGATACCATCAACACATCA
genomic: TTGTCAAAGCAATACTAATAAAGGTTACAGATTTGTTGGTAAAGGCAAAGgtattattcc ... ctctttgcagACTTCTTGTGCATTGTCTCTTGGTTTTGGGGAGGATACCATCAACACATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgttatgatgataaattgacaattcaagcttgcttctttctatctctttgcagACTTCTTGTGCATTGTCTCTTGGTTTTGGGGAGGATACCATCAACACATCATCGGTTCTTGTGATGCCAATGATGTCATCAAGAATGACTGGATTCAGAG
               aattgac  putative branch site (score: 3)
                              cttgcttctttctatc  putative PPT
     tatgatgataaatt  TA-rich tract