1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...caggtcaagtataataaagtagaggcatttattttacatgcaagttgagaccctgaagtggtttcattttcatgtattatctgttcttgttttgtggcagGTGAACATCTCATTGGTTGTAAATGACAGTGAAGCGGAGCAGTGTGTGAGGGCTCTCCACTTAGCCTTCTTTGAGAGTGAGCTCTCAGAGTTAGAGATGG
species | Glycine max |
transcript | GLYMA16G26300.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TTCGAACCCTTGGCATCACGGTGCAAATGATCTCTCAGGGTGCATCTAAN GTGAACATCTCATTGGTTGNAAATGACAGTGAAACCGGAGCAATGTGTGAAEST: gi|58021976|gb|CX708717.1|CX708717
genomic: TTCGAACCCTTGGCATCACGGTGCAAATGATCTCTCAGGGTGCATCTAAGgtatcctcct ... tttgtggcagGTGAACATCTCATTGGTTGTAAATGACAGTGAAGC-GGAGCAGTGTGTGAG
EST: TTCGAACCCTTGGCATCACGGTGCAAATGATCTCTCAGGGTGCATCTAAG GTGAACATCTCATTGGTTGTAAATGACAGTGAAGCGGAGCAGTGTGTGAGGEST: gi|192312160|gb|FK003895.1|FK003895
genomic: TTCGAACCCTTGGCATCACGGTGCAAATGATCTCTCAGGGTGCATCTAAGgtatcctcct ... tttgtggcagGTGAACATCTCATTGGTTGTAAATGACAGTGAAGCGGAGCAGTGTGTGAGG
EST: TTCGAACCCTTGGCATCACGGTGCAAATGATCTCTCAGGGTGCATCTAAG GTGAACATCTCATTGGTTGTAAATGACAGTGAAGCGGAGCAGTGTGTGAGGEST: gi|31469542|gb|CD411570.1|CD411570
genomic: TTCGAACCCTTGGCATCACGGTGCAAATGATCTCTCAGGGTGCATCTAAGgtatcctcct ... tttgtggcagGTGAACATCTCATTGGTTGTAAATGACAGTGAAGCGGAGCAGTGTGTGAGG
EST: TTCGAACCCTTGGCATCACGGTGCAAATGATCTCTCAGGGTGCATCTAAG GTGAACATCTCATTGGTTGTAAATGACAGTGAAGCGGAGCAGTGTGTGAGGEST: gi|207702225|gb|GD682980.1|GD682980
genomic: TTCGAACCCTTGGCATCACGGTGCAAATGATCTCTCAGGGTGCATCTAAGgtatcctcct ... tttgtggcagGTGAACATCTCATTGGTTGTAAATGACAGTGAAGCGGAGCAGTGTGTGAGG
EST: TTCGAACCCTTGGCGTCACTGTGCAAATGATCTCCCAGGGTGCATCTAAG GTGAACATCTCATTGGTTGTAAA
genomic: TTCGAACCCTTGGCATCACGGTGCAAATGATCTCTCAGGGTGCATCTAAGgtatcctcct ... tttgtggcagGTGAACATCTCATTGGTTGTAAA
tgagaccctgaagtggtttcattttcatgtattatctgttcttgttttgtggcagGTGAACATCTCATTGGTTGTAAATGACAGTGAAGCGGAGCAGTGTGTGAGGGCTCTCCACTTAGCCTTCTTTGAGAGTGAGCTCTCAGAGTTAGAGATGG
tctgttcttgtttt CT-rich tract
attttcatgtattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caggtcaagtataataaagtagaggcatttattttacatgcaagttgagaccctgaagtggtttcattttcatgtattatctgttcttgttttgtggcagGTGAACATCTCATTGGTTGTAAATGACAGTGAAGCGGAGCAGTGTGTGAGGGCTCTCCACTTAGCCTTCTTTGAGAGTGAGCTCTCAGAGTTAGAGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - -ggcattt
- - - - - - - - - - - - - - - - - -acatgca
- - - - - - - - - - - - - - - - - - - - - - - - - ccctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttcttg