1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...tacccctggaaatttggtattttctcgacatatctgccgaaggattctaacatttctacattatggttgtttcttgtattacggataatttgatgcacagGGACTAGGAAAGGATGGGAGTGGAATGATAGAGCCTGTCCTGGCACAAGCCACCGAAAATAGGGCAGGACTTGGGAGTCAACAGAAGAAGTTGGATCCTA
species | Glycine max |
transcript | GLYMA16G18030.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: ACAATGTTGGTAATCGGATGCTTCGCAACATGGGCTGGCAAGAAGGATTG GGACTAGGAAAGGATGGGAGTGGAATGATAGAGCCTGTCCTGGCACAAGCCEST: gi|208136025|gb|GD933734.1|GD933734
genomic: ACAATGTTGGTAATCGGATGCTTCGCAACATGGGCTGGCAAGAAGGATTGgtaccgtttc ... tgatgcacagGGACTAGGAAAGGATGGGAGTGGAATGATAGAGCCTGTCCTGGCACAAGCC
EST: ACAATGTTGGTAATCGGATGCTTCGCAACATGGGCTGGCAAGAAGGATTG GGACTAGGAAAGGATGGGAGTGGAATGATAGAGCCTGTCCTGGCACAAGCCEST: gi|207748026|gb|GD719345.1|GD719345
genomic: ACAATGTTGGTAATCGGATGCTTCGCAACATGGGCTGGCAAGAAGGATTGgtaccgtttc ... tgatgcacagGGACTAGGAAAGGATGGGAGTGGAATGATAGAGCCTGTCCTGGCACAAGCC
EST: ACAATGTTGGTAATCGGATGCTTCGCAACATGGGCTGGCAAGAAGGATTG GGACTAGGAAAGGATGGGAGTGGAATGATAGAGCCTGTCCTGGCACAAGCC
genomic: ACAATGTTGGTAATCGGATGCTTCGCAACATGGGCTGGCAAGAAGGATTGgtaccgtttc ... tgatgcacagGGACTAGGAAAGGATGGGAGTGGAATGATAGAGCCTGTCCTGGCACAAGCC
tctaacatttctacattatggttgtttcttgtattacggataatttgatgcacagGGACTAGGAAAGGATGGGAGTGGAATGATAGAGCCTGTCCTGGCACAAGCCACCGAAAATAGGGCAGGACTTGGGAGTCAACAGAAGAAGTTGGATCCTA
ataatttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacccctggaaatttggtattttctcgacatatctgccgaaggattctaacatttctacattatggttgtttcttgtattacggataatttgatgcacagGGACTAGGAAAGGATGGGAGTGGAATGATAGAGCCTGTCCTGGCACAAGCCACCGAAAATAGGGCAGGACTTGGGAGTCAACAGAAGAAGTTGGATCCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
tacccct
- - - - - - - - - - - - - - - - tctgccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ctacatt