Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttctttttggttttactgtgctggactgatatgtacttcacgcatcaattatttcttttctctaattttgttgtgatgatatttctgtttcttatgaagGATGGAATTAAGAGCAAGAAATCATTGAAGACTACTCAACAATCAAAATATCGATTACCAGGAAAAGGCAGCCCAA

Basic information

species Glycine max
transcript GLYMA16G17580.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208066264|gb|GD864061.1|GD864061
EST:     GTGTGCAAAGGAAGCTGGATATGGCAAATGAG                         GATGGAATTAAGAGCAAGAAATCATTGAAGACTACTCAACAATCAAAATAT
genomic: GTGTGCAAAGGAAGCTGGATATGGCAAATGAGgtgagttgtt ... tcttatgaagGATGGAATTAAGAGCAAGAAATCATTGAAGACTACTCAACAATCAAAATAT
EST: gi|207834817|gb|GD807250.1|GD807250
EST:     CAAAGGAAGCTGGATATGGCAAATGAG                         GATGGAATTAAGAGCAAGAAATCATTGAAGACTACTCAACAATCAAAATAT
genomic: CAAAGGAAGCTGGATATGGCAAATGAGgtgagttgtt ... tcttatgaagGATGGAATTAAGAGCAAGAAATCATTGAAGACTACTCAACAATCAAAATAT
EST: gi|254345558|gb|GR851720.1|GR851720
EST:     GTGTGCAAAGGAAGCTGGATATGGCAAATGAG                         GATGGAATTAAGAGCAAGAAATCATTGAAGACTACTCAACAATCAAAATAT
genomic: GTGTGCAAAGGAAGCTGGATATGGCAAATGAGgtgagttgtt ... tcttatgaagGATGGAATTAAGAGCAAGAAATCATTGAAGACTACTCAACAATCAAAATAT
EST: gi|254345557|gb|GR851719.1|GR851719
EST:     GTGTGCAAAGGAAGCTGGATATGGCAAATGAG                         GATGGAATTAAGAGCAAGAAATCATTGAAGACTACTCAACAATCAAAATAT
genomic: GTGTGCAAAGGAAGCTGGATATGGCAAATGAGgtgagttgtt ... tcttatgaagGATGGAATTAAGAGCAAGAAATCATTGAAGACTACTCAACAATCAAAATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaattatttcttttctctaattttgttgtgatgatatttctgtttcttatgaagGATGGAATTAAGAGCAAGAAATCATTGAAGACTACTCAACAATCAAAATATCGATTACCAGGAAAAGGCAGCCCAA
               ctctaat  putative branch site (score: 3)
                                   tatttctgtttctt  putative PPT
           ttttctctaatttt  TA-rich tract