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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgggaattttcattttctttctgtcttgtatcctcatattaaacatatcagtttgccagatagcttcattgttttcttccttcactatttacagGGGCTAAGCCAAATCTTGAGCTGAAATTGCAGGATTTTGGCCCTGATCCTGATGATTGTTTTCTTGGCTTGACTTTAGGTGTAAAGCCCAGTGTTTCAAA

Basic information

species Glycine max
transcript GLYMA16G10820.2
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51336439|gb|CO980305.1|CO980305
EST:     GGTTCCTTGTCCACTCAGTGATCCACTTGAGTTGAAGCTGAGTAGCAAGA                         GGGCTAAGCCAAATCTTGAGCTGAAATTGCAGGATTTTGGCCCTGATCCTG
genomic: GGTTCCTTGTCCACTCAGTGATCCACTTGAGTTGAAGCTGAGTAGCAAGAgttgggaatt ... ctatttacagGGGCTAAGCCAAATCTTGAGCTGAAATTGCAGGATTTTGGCCCTGATCCTG
EST: gi|31307289|gb|CD392492.1|CD392492
EST:     GGTTCCTTGTCCACTCAGTGATCCACTTGAGTTGAAGCTGAGTAGCAAGA                         GGGCTAAGCCAAATCTTGAGCTGAAATTGCAGGATTTTGGCCCTGATCCTG
genomic: GGTTCCTTGTCCACTCAGTGATCCACTTGAGTTGAAGCTGAGTAGCAAGAgttgggaatt ... ctatttacagGGGCTAAGCCAAATCTTGAGCTGAAATTGCAGGATTTTGGCCCTGATCCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaacatatcagtttgccagatagcttcattgttttcttccttcactatttacagGGGCTAAGCCAAATCTTGAGCTGAAATTGCAGGATTTTGGCCCTGATCCTGATGATTGTTTTCTTGGCTTGACTTTAGGTGTAAAGCCCAGTGTTTCAAA
                        cttcattgttttcttc  CT-rich tract
                            attgtttt  TA-rich tract