1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...acaagaattggaactgcatgctttacttagcaatcagttctattgtcaagacaaatagatttgcgttaaataacaatggatattggaatatgttttgcagAATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG
species | Glycine max |
transcript | GLYMA16G06850.3 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: CAAGGAGTAACGATTCCTGAGGCTTATGAACGCCTAATTCTTGACAC AATTAGAGGTGATCAGCAACATTTTGCTCGCAGAGATGAGTTGAAGEST: gi|208263491|gb|GE061119.1|GE061119
genomic: CAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACACgtatgttcct ... tgttttgcagAATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG
EST: GGCTTATGAACGCCTAATTTCTTGACAC AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGEST: gi|6566164|gb|AW233801.1|AW233801
genomic: GGCTTATGAACGCCTAA-TTCTTGACACgtatgttcct ... tgttttgcagAATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG
EST: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACAC AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGEST: gi|15661766|gb|BI699137.1|BI699137
genomic: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACACgtatgttcct ... tgttttgcagAATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG
EST: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACAC AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGEST: gi|37994251|gb|CF805997.1|CF805997
genomic: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACACgtatgttcct ... tgttttgcagAATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG
EST: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACAC AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGEST: gi|14991365|gb|BI317038.1|BI317038
genomic: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACACgtatgttcct ... tgttttgcagAATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG
EST: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCTTAATTCTTGACAC AATTAGAGGTGATCAGCAACATTTTGTTCGCAGGGATGAGTGGAAGEST: gi|213594893|gb|DB977221.1|DB977221
genomic: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACACgtatgttcct ... tgttttgcagAATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG
EST: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACAC AATTAGAGGTGATCAGCAACATTTTCATCGCAGAGATGAGTTGAAGEST: gi|7925329|gb|AW831416.1|AW831416
genomic: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACACgtatgttcct ... tgttttgcagAATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG
EST: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACAC AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAATEST: gi|19053614|gb|BM732281.1|BM732281
genomic: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACACgtatgttcct ... tgttttgcagAATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG
EST: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACAC AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGEST: gi|38191492|gb|CF920698.1|CF920698
genomic: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACACgtatgttcct ... tgttttgcagAATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG
EST: TATCAAGGAGTAACCATTCCTGAGGGTTATGAACGCCTAATTCTTGACAC AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGEST: gi|16343150|gb|BI968745.1|BI968745
genomic: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACACgtatgttcct ... tgttttgcagAATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG
EST: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACAC AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGEST: gi|58023690|gb|CX710431.1|CX710431
genomic: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACACgtatgttcct ... tgttttgcagAATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG
EST: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACAC AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGEST: gi|16346631|gb|BI972226.1|BI972226
genomic: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACACgtatgttcct ... tgttttgcagAATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG
EST: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACAC AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGEST: gi|192310376|gb|FK002256.1|FK002256
genomic: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACACgtatgttcct ... tgttttgcagAATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG
EST: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACAC AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGEST: gi|33390426|gb|CA853621.1|CA853621
genomic: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACACgtatgttcct ... tgttttgcagAATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG
EST: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACAC AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGEST: gi|16346044|gb|BI971639.1|BI971639
genomic: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACACgtatgttcct ... tgttttgcagAATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG
EST: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACAC AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGEST: gi|192330835|gb|FK021608.1|FK021608
genomic: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACACgtatgttcct ... tgttttgcagAATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG
EST: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACAC AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGEST: gi|37994259|gb|CF806005.1|CF806005
genomic: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACACgtatgttcct ... tgttttgcagAATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG
EST: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACAC AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGEST: gi|15661712|gb|BI699083.1|BI699083
genomic: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACACgtatgttcct ... tgttttgcagAATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG
EST: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACAC NATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGGCAEST: gi|58020056|gb|CX706798.1|CX706798
genomic: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACACgtatgttcct ... tgttttgcagAATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGGCA
EST: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACAC AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGEST: gi|37995677|gb|CF807266.1|CF807266
genomic: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACACgtatgttcct ... tgttttgcagAATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG
EST: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACAC AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGEST: gi|7588280|gb|AW704079.1|AW704079
genomic: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACACgtatgttcct ... tgttttgcagAATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG
EST: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACAC AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGEST: gi|7693442|gb|AW761534.1|AW761534
genomic: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACACgtatgttcct ... tgttttgcagAATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG
EST: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACAC AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGEST: gi|37994622|gb|CF806296.1|CF806296
genomic: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACACgtatgttcct ... tgttttgcagAATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG
EST: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACAC AATTAGAGGTGATCAGNCA-CATTTTGTTCGCAGAGATGAGTTGAA
genomic: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACACgtatgttcct ... tgttttgcagAATTAGAGGTGATCAG-CAACATTTTGTTCGCAGAGATGAGTTGAA
tcaagacaaatagatttgcgttaaataacaatggatattggaatatgttttgcagAATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG
aaataac putative branch site (score: 2)
ttaaataacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaagaattggaactgcatgctttacttagcaatcagttctattgtcaagacaaatagatttgcgttaaataacaatggatattggaatatgttttgcagAATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - -gcatgct
- - - - - - - - - - - - - - -gcaatca
- - - - - - - - - - - - - - - - - - - - - -tgtcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatgga